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guix/gnu/packages/patches/scilab-hdf5-1.8-api.patch

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gnu: scilab: Update to 2023.1.0. * gnu/packages/maths.scm (scilab): Update to 2023.1.0. [source] Use git-fetch. <modules>: Add (guix build utils) and (ice-9 ftw). <patches>: Add patch for hdf5 >= 1.10. <snippet>: Move contents of the "scilab" directory to its parents. Remove the other files and autogenerated files. [native-inputs]: Add autoconf, autoconf-archive, automake, bison, eigen, flex, libtool, ocaml and ocaml-findlib. [inputs]: Add ocaml-num, replace hdf5-1.8 by hdf5-1.14 and suitesparse-3 by suitesparse. [arguments]: Remove quasiquote. Add --enable-build-parser, --with-eigen-include=..., OCAMLC=... and OCAMLOPT=... to #:configure-flags. <#:phases>: Add fix-ocaml-num, remove-desktop-files, bootstrap-dynamic_link-scripts and build-parsers phases. Remove fixes for compilation and linker errors from the pre-build phase. [home-page]: Update URL. [description]: Add two spaces between sentences. [license]: Update to gpl2 and bsd-3. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-09-25 17:13:12 -04:00
This patch fixes the compilation with hdf5 version >= 1.10. Adapted from
https://aur.archlinux.org/cgit/aur.git/plain/hdf5_18_api.patch?h=scilab-git.
diff -ur a/scilab/modules/hdf5/includes/HDF5Objects.h b/scilab/modules/hdf5/includes/HDF5Objects.h
--- a/scilab/modules/hdf5/includes/HDF5Objects.h
+++ b/scilab/modules/hdf5/includes/HDF5Objects.h
@@ -16,14 +16,12 @@
#ifndef __HDF5OBJECTS_H__
#define __HDF5OBJECTS_H__
-#define H5_NO_DEPRECATED_SYMBOLS
#undef H5_USE_16_API
+#define H5_USE_18_API
-#define H5Eset_auto_vers 2
#include <hdf5.h>
#include <hdf5_hl.h>
-#undef H5_NO_DEPRECATED_SYMBOLS
//#define __HDF5OBJECTS_DEBUG__
//#define __HDF5ERROR_PRINT__
diff -ur a/scilab/modules/hdf5/Makefile.am b/scilab/modules/hdf5/Makefile.am
--- a/scilab/modules/hdf5/Makefile.am
+++ b/scilab/modules/hdf5/Makefile.am
@@ -104,8 +104,7 @@
-DH5Gopen_vers=2 \
-DH5Tget_array_dims_vers=2 \
-DH5Acreate_vers=2 \
- -DH5Rdereference_vers=2 \
- -DNO_DEPRECATED_SYMBOLS
+ -DH5Rdereference_vers=2
libscihdf5_la_CPPFLAGS = \
diff -ur a/scilab/modules/hdf5/sci_gateway/cpp/sci_hdf5_listvar_v3.cpp b/scilab/modules/hdf5/sci_gateway/cpp/sci_hdf5_listvar_v3.cpp
--- a/scilab/modules/hdf5/sci_gateway/cpp/sci_hdf5_listvar_v3.cpp
+++ b/scilab/modules/hdf5/sci_gateway/cpp/sci_hdf5_listvar_v3.cpp
@@ -13,6 +13,8 @@
*
*/
+#define H5_USE_18_API
+
#include <vector>
#include "function.hxx"
#include "string.hxx"
diff -ur a/scilab/modules/hdf5/src/c/h5_readDataFromFile.c b/scilab/modules/hdf5/src/c/h5_readDataFromFile.c
--- a/scilab/modules/hdf5/src/c/h5_readDataFromFile.c
+++ b/scilab/modules/hdf5/src/c/h5_readDataFromFile.c
@@ -13,7 +13,7 @@
*
*/
-#define H5_NO_DEPRECATED_SYMBOLS
+#define H5_USE_18_API
#ifndef _MSC_VER
#include <sys/time.h>
diff -ur a/scilab/modules/hdf5/src/c/h5_readDataFromFile_v1.c b/scilab/modules/hdf5/src/c/h5_readDataFromFile_v1.c
--- a/scilab/modules/hdf5/src/c/h5_readDataFromFile_v1.c
+++ b/scilab/modules/hdf5/src/c/h5_readDataFromFile_v1.c
@@ -13,7 +13,7 @@
*
*/
-#define H5_NO_DEPRECATED_SYMBOLS
+#define H5_USE_18_API
#ifndef _MSC_VER
#include <sys/time.h>
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