mirror of
https://git.in.rschanz.org/ryan77627/guix.git
synced 2024-11-14 19:05:10 -05:00
57 lines
2.1 KiB
Diff
57 lines
2.1 KiB
Diff
|
--- a/Makefile 2017-04-09 12:48:15.000000000 +0200
|
||
|
|
+++ b/Makefile 2017-06-21 14:26:02.749282787 +0200
|
||
|
|
@@ -9,8 +9,8 @@
|
||
|
|
|
||
|
|
# Flags
|
||
|
|
CXX=g++
|
||
|
|
-CXXFLAGS += -isystem ${SEQTK_ROOT} -isystem ${BOOST_ROOT} -pedantic -W -Wall -Wno-unknown-pragmas -D__STDC_LIMIT_MACROS -fno-strict-aliasing
|
||
|
|
-LDFLAGS += -L${SEQTK_ROOT} -L${BOOST_ROOT}/stage/lib -lboost_iostreams -lboost_filesystem -lboost_system -lboost_program_options -lboost_date_time
|
||
|
|
+CXXFLAGS += -pedantic -W -Wall -Wno-unknown-pragmas -D__STDC_LIMIT_MACROS -fno-strict-aliasing
|
||
|
|
+LDFLAGS += -lboost_iostreams -lboost_filesystem -lboost_system -lboost_program_options -lboost_date_time
|
||
|
|
|
||
|
|
# Additional flags for release/debug
|
||
|
|
ifeq (${PARALLEL}, 1)
|
||
|
|
@@ -23,7 +23,7 @@
|
||
|
|
ifeq (${STATIC}, 1)
|
||
|
|
LDFLAGS += -static -static-libgcc -pthread -lhts -lz
|
||
|
|
else
|
||
|
|
- LDFLAGS += -lhts -lz -Wl,-rpath,${SEQTK_ROOT},-rpath,${BOOST_ROOT}/stage/lib
|
||
|
|
+ LDFLAGS += -lhts -lz
|
||
|
|
endif
|
||
|
|
ifeq (${DEBUG}, 1)
|
||
|
|
CXXFLAGS += -g -O0 -fno-inline -DDEBUG
|
||
|
|
@@ -41,29 +41,17 @@
|
||
|
|
DELLYSOURCES = $(wildcard src/*.h) $(wildcard src/*.cpp)
|
||
|
|
|
||
|
|
# Targets
|
||
|
|
-TARGETS = .htslib .bcftools .boost src/delly src/cov src/dpe
|
||
|
|
+TARGETS = src/delly src/cov src/dpe
|
||
|
|
|
||
|
|
all: $(TARGETS)
|
||
|
|
|
||
|
|
-.htslib: $(HTSLIBSOURCES)
|
||
|
|
- cd src/htslib && make && make lib-static && cd ../../ && touch .htslib
|
||
|
|
-
|
||
|
|
-.bcftools: $(HTSLIBSOURCES)
|
||
|
|
- cd src/bcftools && make && cd ../../ && touch .bcftools
|
||
|
|
-
|
||
|
|
-.boost: $(BOOSTSOURCES)
|
||
|
|
- cd src/modular-boost && ./bootstrap.sh --prefix=${PWD}/src/modular-boost --without-icu --with-libraries=iostreams,filesystem,system,program_options,date_time && ./b2 && ./b2 headers && cd ../../ && touch .boost
|
||
|
|
-
|
||
|
|
-src/delly: .htslib .bcftools .boost $(DELLYSOURCES)
|
||
|
|
- $(CXX) $(CXXFLAGS) $@.cpp -o $@ $(LDFLAGS)
|
||
|
|
-
|
||
|
|
-src/cov: .htslib .bcftools .boost $(DELLYSOURCES)
|
||
|
|
+src/cov: $(DELLYSOURCES)
|
||
|
|
$(CXX) $(CXXFLAGS) $@.cpp -o $@ $(LDFLAGS)
|
||
|
|
|
||
|
|
-src/dpe: .htslib .bcftools .boost $(DELLYSOURCES)
|
||
|
|
+src/dpe: $(DELLYSOURCES)
|
||
|
|
$(CXX) $(CXXFLAGS) $@.cpp -o $@ $(LDFLAGS)
|
||
|
|
|
||
|
|
clean:
|
||
|
|
cd src/htslib && make clean
|
||
|
|
cd src/modular-boost && ./b2 --clean-all
|
||
|
|
- rm -f $(TARGETS) $(TARGETS:=.o) .htslib .boost .bcftools
|
||
|
|
+ rm -f $(TARGETS) $(TARGETS:=.o)
|