mirror of
https://git.in.rschanz.org/ryan77627/guix.git
synced 2024-11-18 12:47:33 -05:00
34 lines
1.8 KiB
Diff
34 lines
1.8 KiB
Diff
|
diff -Naur pigx_rnaseq-0.0.19/configure.ac pigx_rnaseq-0.0.19.patched/configure.ac
|
||
|
|
--- pigx_rnaseq-0.0.19/configure.ac 2021-07-23 14:01:00.304391428 +0200
|
||
|
|
+++ pigx_rnaseq-0.0.19.patched/configure.ac 2021-10-06 13:51:29.512960106 +0200
|
||
|
|
@@ -38,7 +38,6 @@
|
||
|
|
find_or_override_prog([GNUBASH], [bash])
|
||
|
|
find_or_override_prog([SNAKEMAKE], [snakemake])
|
||
|
|
find_or_override_prog([PANDOC], [pandoc])
|
||
|
|
-find_or_override_prog([PANDOC_CITEPROC], [pandoc-citeproc])
|
||
|
|
find_or_override_prog([STAR], [STAR])
|
||
|
|
find_or_override_prog([HISAT2], [hisat2])
|
||
|
|
find_or_override_prog([HISAT2_BUILD], [hisat2-build])
|
||
|
|
diff -Naur pigx_rnaseq-0.0.19/Makefile.in pigx_rnaseq-0.0.19.patched/Makefile.in
|
||
|
|
--- pigx_rnaseq-0.0.19/Makefile.in 2021-08-13 13:40:10.402922844 +0200
|
||
|
|
+++ pigx_rnaseq-0.0.19.patched/Makefile.in 2021-10-06 13:51:04.052247524 +0200
|
||
|
|
@@ -410,7 +410,6 @@
|
||
|
|
PACKAGE_URL = @PACKAGE_URL@
|
||
|
|
PACKAGE_VERSION = @PACKAGE_VERSION@
|
||
|
|
PANDOC = @PANDOC@
|
||
|
|
-PANDOC_CITEPROC = @PANDOC_CITEPROC@
|
||
|
|
PATH_SEPARATOR = @PATH_SEPARATOR@
|
||
|
|
PYTHON = @PYTHON@
|
||
|
|
PYTHONPATH = @PYTHONPATH@
|
||
|
|
diff -Naur pigx_rnaseq-0.0.19/pigx-common/common/pigx-runner.in pigx_rnaseq-0.0.19.patched/pigx-common/common/pigx-runner.in
|
||
|
|
--- pigx_rnaseq-0.0.19/pigx-common/common/pigx-runner.in 2021-08-13 13:27:50.494352532 +0200
|
||
|
|
+++ pigx_rnaseq-0.0.19.patched/pigx-common/common/pigx-runner.in 2021-10-06 13:51:38.798220108 +0200
|
||
|
|
@@ -379,7 +379,6 @@
|
||
|
|
if path.exists(bin): shutil.rmtree(bin)
|
||
|
|
os.makedirs(bin, exist_ok=True)
|
||
|
|
os.symlink('@PANDOC@', path.join(bin, "pandoc"))
|
||
|
|
- os.symlink('@PANDOC_CITEPROC@', path.join(bin, "pandoc-citeproc"))
|
||
|
|
os.symlink('@RSCRIPT@', path.join(bin, "Rscript"))
|
||
|
|
os.environ['PATH'] = path.abspath(bin) + ":" + os.environ['PATH']
|
||
|
|
os.environ['PIGX_PATH'] = path.abspath(bin) + ":" + os.environ['PATH']
|