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gnu: Add r-deconvr.
* gnu/packages/bioconductor.scm (r-deconvr): New variable.
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@ -2188,6 +2188,50 @@ (define-public r-decipher
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biological sequences.")
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(license license:gpl3)))
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(define-public r-deconvr
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(package
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(name "r-deconvr")
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(version "1.2.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "deconvR" version))
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(sha256
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(base32
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"091z3lncamscsvzj63zzbw7dr7vnkn0jwfkm5ljq4112w4rxgrm3"))))
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(properties `((upstream-name . "deconvR")))
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(build-system r-build-system)
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(propagated-inputs
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(list r-assertthat
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r-biocgenerics
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r-data-table
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r-dplyr
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r-e1071
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r-foreach
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r-genomicranges
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r-iranges
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r-magrittr
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r-mass
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r-matrixstats
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r-methylkit
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r-nnls
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r-quadprog
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r-rsq
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r-s4vectors
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r-tidyr))
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(native-inputs (list r-knitr))
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(home-page "https://github.com/BIMSBbioinfo/deconvR")
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(synopsis "Simulation and deconvolution of omic profiles")
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(description
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"This package provides a collection of functions designed for analyzing
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deconvolution of the bulk sample(s) using an atlas of reference omic signature
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profiles and a user-selected model. Users are given the option to create or
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extend a reference atlas and,also simulate the desired size of the bulk
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signature profile of the reference cell types. The package includes the
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cell-type-specific methylation atlas and, Illumina Epic B5 probe ids that can
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be used in deconvolution. Additionally, we included @code{BSmeth2Probe}, to
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make mapping WGBS data to their probe IDs easier.")
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(license license:artistic2.0)))
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(define-public r-decoupler
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(package
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(name "r-decoupler")
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