gnu: Add r-deconvr.

* gnu/packages/bioconductor.scm (r-deconvr): New variable.
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Ricardo Wurmus 2022-06-12 22:50:29 +02:00
parent eec1724ea6
commit 0006a9a83a
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@ -2188,6 +2188,50 @@ (define-public r-decipher
biological sequences.")
(license license:gpl3)))
(define-public r-deconvr
(package
(name "r-deconvr")
(version "1.2.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "deconvR" version))
(sha256
(base32
"091z3lncamscsvzj63zzbw7dr7vnkn0jwfkm5ljq4112w4rxgrm3"))))
(properties `((upstream-name . "deconvR")))
(build-system r-build-system)
(propagated-inputs
(list r-assertthat
r-biocgenerics
r-data-table
r-dplyr
r-e1071
r-foreach
r-genomicranges
r-iranges
r-magrittr
r-mass
r-matrixstats
r-methylkit
r-nnls
r-quadprog
r-rsq
r-s4vectors
r-tidyr))
(native-inputs (list r-knitr))
(home-page "https://github.com/BIMSBbioinfo/deconvR")
(synopsis "Simulation and deconvolution of omic profiles")
(description
"This package provides a collection of functions designed for analyzing
deconvolution of the bulk sample(s) using an atlas of reference omic signature
profiles and a user-selected model. Users are given the option to create or
extend a reference atlas and,also simulate the desired size of the bulk
signature profile of the reference cell types. The package includes the
cell-type-specific methylation atlas and, Illumina Epic B5 probe ids that can
be used in deconvolution. Additionally, we included @code{BSmeth2Probe}, to
make mapping WGBS data to their probe IDs easier.")
(license license:artistic2.0)))
(define-public r-decoupler
(package
(name "r-decoupler")