From 01365740ea5f53fb726fe32b2f5994e8380e99af Mon Sep 17 00:00:00 2001
From: Ricardo Wurmus <rekado@elephly.net>
Date: Fri, 3 Nov 2023 17:06:12 +0100
Subject: [PATCH] gnu: r-variantannotation: Update to 1.48.0.

* gnu/packages/bioconductor.scm (r-variantannotation): Update to 1.48.0.
[native-inputs]: Add r-knitr.

Change-Id: If1ef81366022c829b2510435412bd16586401ae3
---
 gnu/packages/bioconductor.scm | 9 +++++----
 1 file changed, 5 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index e6f5a7bb6d..d517f43b3e 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -11071,15 +11071,16 @@ (define-public r-valr
 (define-public r-variantannotation
   (package
     (name "r-variantannotation")
-    (version "1.46.0")
+    (version "1.48.0")
     (source (origin
               (method url-fetch)
               (uri (bioconductor-uri "VariantAnnotation" version))
               (sha256
                (base32
-                "0masx496cd4ypz6r0l8kk8vi81sipqdnx4iyifjvkrds1p87mvsm"))))
+                "1r1cyimr5l5jzgxvmrm3vq8mvz3f1klfdwy9mz31xvnvgjacr58p"))))
     (properties
      `((upstream-name . "VariantAnnotation")))
+    (build-system r-build-system)
     (propagated-inputs
      (list r-annotationdbi
            r-biobase
@@ -11092,14 +11093,14 @@ (define-public r-variantannotation
            r-genomicranges
            r-iranges
            r-matrixgenerics
-           r-summarizedexperiment
            r-rhtslib
            r-rsamtools
            r-rtracklayer
            r-s4vectors
+           r-summarizedexperiment
            r-xvector
            r-zlibbioc))
-    (build-system r-build-system)
+    (native-inputs (list r-knitr))
     (home-page "https://bioconductor.org/packages/VariantAnnotation")
     (synopsis "Package for annotation of genetic variants")
     (description "This R package can annotate variants, compute amino acid