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gnu: r-trackviewer: Update to 1.40.0.

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* gnu/packages/bioconductor.scm (r-trackviewer): Update to 1.40.0.
[propagated-inputs]: Remove r-graph and r-rgraphviz; add r-igraph and r-txdbmaker.

Change-Id: I90fbb82ff3261d78d5a34398319032f18068fe6a
This commit is contained in:
Ricardo Wurmus 2024-05-07 13:06:34 +02:00
parent e5db1eda48
commit 014cb61aec
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GPG key ID: 197A5888235FACAC
1 changed files with 5 additions and 6 deletions
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11
gnu/packages/bioconductor.scm
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@ -11692,17 +11692,16 @@ (define-public r-toast
@end enumerate") @end enumerate")
(license license:gpl2))) (license license:gpl2)))
;; TODO: check javascript
(define-public r-trackviewer (define-public r-trackviewer
(package (package
(name "r-trackviewer") (name "r-trackviewer")
(version "1.38.2") (version "1.40.0")
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (bioconductor-uri "trackViewer" version)) (uri (bioconductor-uri "trackViewer" version))
(sha256 (sha256
(base32 (base32
"1zgxp76ykgn4wk6nnpafjpswcky23jpghzzs68z0hhlzv4cc40s6")) "01m0jwig3l6dfhd3w5aq4sx2krsipjg5jjxa78kalfrzrm6k05s4"))
(snippet (snippet
'(delete-file "inst/htmlwidgets/lib/d3/d3.v4.min.js")))) '(delete-file "inst/htmlwidgets/lib/d3/d3.v4.min.js"))))
(properties `((upstream-name . "trackViewer"))) (properties `((upstream-name . "trackViewer")))
@ -11726,20 +11725,20 @@ (define-public r-trackviewer
r-genomicalignments r-genomicalignments
r-genomicfeatures r-genomicfeatures
r-genomicranges r-genomicranges
r-graph
r-grimport r-grimport
r-gviz r-gviz
r-htmlwidgets r-htmlwidgets
r-igraph
r-interactionset r-interactionset
r-iranges r-iranges
r-plotrix r-plotrix
r-rgraphviz
r-rhdf5 r-rhdf5
r-rsamtools r-rsamtools
r-rtracklayer r-rtracklayer
r-s4vectors r-s4vectors
r-scales r-scales
r-strawr)) r-strawr
r-txdbmaker))
(native-inputs (native-inputs
(list esbuild (list esbuild
r-knitr r-knitr