gnu: Add r-delayedmatrixstats.

* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): New variable.
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Ricardo Wurmus 2018-02-14 14:27:43 +01:00 committed by Ricardo Wurmus
parent fc162dbaec
commit 05f7296012
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@ -10626,6 +10626,38 @@ (define-public r-scran
variable and significantly correlated genes.")
(license license:gpl3)))
(define-public r-delayedmatrixstats
(package
(name "r-delayedmatrixstats")
(version "1.0.2")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "DelayedMatrixStats" version))
(sha256
(base32
"1nfdan0k2z4mynxyblsil0cjclsy63b0w9r1hczfk27i8hmxx13h"))))
(properties
`((upstream-name . "DelayedMatrixStats")))
(build-system r-build-system)
(propagated-inputs
`(("r-delayedarray" ,r-delayedarray)
("r-iranges" ,r-iranges)
("r-matrix" ,r-matrix)
("r-matrixstats" ,r-matrixstats)
("r-s4vectors" ,r-s4vectors)))
(home-page "https://github.com/PeteHaitch/DelayedMatrixStats")
(synopsis "Functions that apply to rows and columns of DelayedMatrix objects")
(description
"This package provides a port of the @code{matrixStats} API for use with
@code{DelayedMatrix} objects from the @code{DelayedArray} package. It
contains high-performing functions operating on rows and columns of
@code{DelayedMatrix} objects, e.g. @code{colMedians}, @code{rowMedians},
@code{colRanks}, @code{rowRanks}, @code{colSds}, and @code{rowSds}. Functions
are optimized per data type and for subsetted calculations such that both
memory usage and processing time is minimized.")
(license license:expat)))
(define htslib-for-sambamba
(let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5"))
(package