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gnu: Add python-slurm-magic.

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* gnu/packages/parallel.scm (python-slurm-magic): New variable.
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Ludovic Courtès 2019-06-18 16:51:22 +02:00 committed by Ludovic Courtès
parent b95ccbaf61
commit 0c212811ac
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1 changed files with 52 additions and 1 deletions
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53
gnu/packages/parallel.scm
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@ -9,6 +9,7 @@
;;; Copyright © 2017, 2018 Rutger Helling <rhelling@mykolab.com>
;;; Copyright © 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2018 Clément Lassieur <clement@lassieur.org>
;;; Copyright © 2019 Ludovic Courtès <ludo@gnu.org>
;;;
;;; This file is part of GNU Guix.
;;;
@ -26,8 +27,10 @@
;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>.
(define-module (gnu packages parallel)
#:use-module (guix build-system gnu)
#:use-module (guix download)
#:use-module (guix git-download)
#:use-module (guix build-system gnu)
#:use-module (guix build-system python)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
#:use-module (gnu packages)
@ -40,6 +43,7 @@ (define-module (gnu packages parallel)
#:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages readline)
#:use-module (gnu packages tcl)
#:use-module (gnu packages tls)
@ -188,3 +192,50 @@ (define-public slurm-drmaa
can use the same high-level API to link their software with different
cluster/resource management systems.")
(license license:gpl3+)))
(define-public python-slurm-magic
(let ((commit "73dd1a2b85799f7dae4b3f1cd9027536eff0c4d7")
(revision "0"))
(package
(name "python-slurm-magic")
(version (git-version "0.0" revision commit))
(home-page "https://github.com/NERSC/slurm-magic")
(source (origin
(method git-fetch)
(uri (git-reference (url home-page)
(commit commit)))
(sha256
(base32
"19pp2vs0wm8mx0arz9n6lw9wgyv70w9wyi4y6b91qc5j3bz5igfs"))
(file-name (git-file-name name version))))
(build-system python-build-system)
(arguments
'(#:phases (modify-phases %standard-phases
(add-before 'build 'set-slurm-path
(lambda* (#:key inputs #:allow-other-keys)
;; The '_execute' method tries to exec 'salloc'
;; etc. from $PATH. Record the absolute file name
;; instead.
(let ((slurm (assoc-ref inputs "slurm")))
(substitute* "slurm_magic.py"
(("name = (.*)$" _ value)
(string-append "name = \""
slurm "/bin/\" + "
value "\n")))
#t))))))
(inputs
`(("slurm" ,slurm)))
(propagated-inputs
`(("python-ipython" ,python-ipython)
("python-pandas" ,python-pandas)))
(synopsis "Control the SLURM batch scheduler from Jupyter Notebook")
(description
"This package implements Jupyter/IPython
@uref{http://ipython.readthedocs.io/en/stable/interactive/magics.html, magic
commands} for interacting with the SLURM workload manager. SLURM magic simply
wraps command-line executables and the commands themselves should look like
their command-line counterparts. Commands are spawned via @code{subprocess}
and output captured in the notebook. Whatever arguments are accepted by a
SLURM command line executable are also accepted by the corresponding magic
command---e.g., @code{%salloc}, @code{%sbatch}, etc.")
(license license:bsd-3))))