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gnu: r-bsgenome-celegans-ucsc-ce10: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce10): Move from here... * gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce10): ...to here.
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2 changed files with 32 additions and 32 deletions
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@ -65,6 +65,38 @@ (define-public r-bsgenome-celegans-ucsc-ce6
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objects.")
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(license license:artistic2.0)))
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(define-public r-bsgenome-celegans-ucsc-ce10
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(package
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(name "r-bsgenome-celegans-ucsc-ce10")
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(version "1.4.0")
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(source (origin
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(method url-fetch)
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;; We cannot use bioconductor-uri here because this tarball is
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;; located under "data/annotation/" instead of "bioc/".
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(uri (string-append "https://www.bioconductor.org/packages/"
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"release/data/annotation/src/contrib/"
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"BSgenome.Celegans.UCSC.ce10_"
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version ".tar.gz"))
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(sha256
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(base32
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"1zaym97jk4npxk14ifvwz2rvhm4zx9xgs33r9vvx9rlynp0gydrk"))))
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(properties
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`((upstream-name . "BSgenome.Celegans.UCSC.ce10")))
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(build-system r-build-system)
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;; As this package provides little more than a very large data file it
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;; doesn't make sense to build substitutes.
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(arguments `(#:substitutable? #f))
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(propagated-inputs
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`(("r-bsgenome" ,r-bsgenome)))
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(home-page
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"https://www.bioconductor.org/packages/BSgenome.Celegans.UCSC.ce10/")
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(synopsis "Full genome sequences for Worm")
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(description
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"This package provides full genome sequences for Caenorhabditis
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elegans (Worm) as provided by UCSC (ce10, Oct 2010) and stored in Biostrings
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objects.")
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(license license:artistic2.0)))
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(define-public r-bsgenome-dmelanogaster-ucsc-dm6
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(package
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(name "r-bsgenome-dmelanogaster-ucsc-dm6")
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@ -8140,38 +8140,6 @@ (define-public r-txdb-mmusculus-ucsc-mm10-knowngene
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based on the knownGene track.")
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(license license:artistic2.0)))
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(define-public r-bsgenome-celegans-ucsc-ce10
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(package
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(name "r-bsgenome-celegans-ucsc-ce10")
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(version "1.4.0")
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(source (origin
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(method url-fetch)
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;; We cannot use bioconductor-uri here because this tarball is
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;; located under "data/annotation/" instead of "bioc/".
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(uri (string-append "https://www.bioconductor.org/packages/"
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"release/data/annotation/src/contrib/"
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"BSgenome.Celegans.UCSC.ce10_"
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version ".tar.gz"))
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(sha256
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(base32
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"1zaym97jk4npxk14ifvwz2rvhm4zx9xgs33r9vvx9rlynp0gydrk"))))
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(properties
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`((upstream-name . "BSgenome.Celegans.UCSC.ce10")))
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(build-system r-build-system)
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;; As this package provides little more than a very large data file it
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;; doesn't make sense to build substitutes.
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(arguments `(#:substitutable? #f))
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(propagated-inputs
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`(("r-bsgenome" ,r-bsgenome)))
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(home-page
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"https://www.bioconductor.org/packages/BSgenome.Celegans.UCSC.ce10/")
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(synopsis "Full genome sequences for Worm")
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(description
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"This package provides full genome sequences for Caenorhabditis
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elegans (Worm) as provided by UCSC (ce10, Oct 2010) and stored in Biostrings
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objects.")
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(license license:artistic2.0)))
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(define-public r-bsgenome-dmelanogaster-ucsc-dm3
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(package
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(name "r-bsgenome-dmelanogaster-ucsc-dm3")
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