ryan77627/guix
1
0
Fork 0
mirror of https://git.in.rschanz.org/ryan77627/guix.git synced 2024-12-25 05:48:07 -05:00
Code Issues Projects Releases Packages Wiki Activity Actions

gnu: r-bsgenome-celegans-ucsc-ce10: Move to (gnu packages bioconductor).

Browse source 
* gnu/packages/bioinformatics.scm (r-bsgenome-celegans-ucsc-ce10):
Move from here...
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce10): ...to here.
This commit is contained in:
Ricardo Wurmus 2019-03-06 21:30:30 +01:00
parent b7d93cf508
commit 0c792ffbd1
No known key found for this signature in database
GPG key ID: 197A5888235FACAC
2 changed files with 32 additions and 32 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

32
gnu/packages/bioconductor.scm
View file

@ -65,6 +65,38 @@ (define-public r-bsgenome-celegans-ucsc-ce6
objects.") objects.")
(license license:artistic2.0))) (license license:artistic2.0)))
(define-public r-bsgenome-celegans-ucsc-ce10
(package
(name "r-bsgenome-celegans-ucsc-ce10")
(version "1.4.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"BSgenome.Celegans.UCSC.ce10_"
version ".tar.gz"))
(sha256
(base32
"1zaym97jk4npxk14ifvwz2rvhm4zx9xgs33r9vvx9rlynp0gydrk"))))
(properties
`((upstream-name . "BSgenome.Celegans.UCSC.ce10")))
(build-system r-build-system)
;; As this package provides little more than a very large data file it
;; doesn't make sense to build substitutes.
(arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)))
(home-page
"https://www.bioconductor.org/packages/BSgenome.Celegans.UCSC.ce10/")
(synopsis "Full genome sequences for Worm")
(description
"This package provides full genome sequences for Caenorhabditis
elegans (Worm) as provided by UCSC (ce10, Oct 2010) and stored in Biostrings
objects.")
(license license:artistic2.0)))
(define-public r-bsgenome-dmelanogaster-ucsc-dm6 (define-public r-bsgenome-dmelanogaster-ucsc-dm6
(package (package
(name "r-bsgenome-dmelanogaster-ucsc-dm6") (name "r-bsgenome-dmelanogaster-ucsc-dm6")

32
gnu/packages/bioinformatics.scm
View file

@ -8140,38 +8140,6 @@ (define-public r-txdb-mmusculus-ucsc-mm10-knowngene
based on the knownGene track.") based on the knownGene track.")
(license license:artistic2.0))) (license license:artistic2.0)))
(define-public r-bsgenome-celegans-ucsc-ce10
(package
(name "r-bsgenome-celegans-ucsc-ce10")
(version "1.4.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"BSgenome.Celegans.UCSC.ce10_"
version ".tar.gz"))
(sha256
(base32
"1zaym97jk4npxk14ifvwz2rvhm4zx9xgs33r9vvx9rlynp0gydrk"))))
(properties
`((upstream-name . "BSgenome.Celegans.UCSC.ce10")))
(build-system r-build-system)
;; As this package provides little more than a very large data file it
;; doesn't make sense to build substitutes.
(arguments `(#:substitutable? #f))
(propagated-inputs
`(("r-bsgenome" ,r-bsgenome)))
(home-page
"https://www.bioconductor.org/packages/BSgenome.Celegans.UCSC.ce10/")
(synopsis "Full genome sequences for Worm")
(description
"This package provides full genome sequences for Caenorhabditis
elegans (Worm) as provided by UCSC (ce10, Oct 2010) and stored in Biostrings
objects.")
(license license:artistic2.0)))
(define-public r-bsgenome-dmelanogaster-ucsc-dm3 (define-public r-bsgenome-dmelanogaster-ucsc-dm3
(package (package
(name "r-bsgenome-dmelanogaster-ucsc-dm3") (name "r-bsgenome-dmelanogaster-ucsc-dm3")