gnu: Add python-slamdunk.

* gnu/packages/bioinformatics.scm (python-slamdunk): New variable.
This commit is contained in:
Ricardo Wurmus 2023-01-25 15:18:11 +01:00
parent ba1b61a72d
commit 0d713e0140
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@ -7012,6 +7012,38 @@ (define-public python-screed
sequence itself can be retrieved from these databases.")
(license license:bsd-3)))
(define-public python-slamdunk
(package
(name "python-slamdunk")
(version "0.4.3")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/t-neumann/slamdunk")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
"0lv3h5k2pn1pz35kz0wk5xmricxzy8qscs2y7nwh0k6x4pn0m0s5"))))
(build-system python-build-system)
(propagated-inputs
(list python-biopython
python-intervaltree
python-joblib
python-pandas
python-pybedtools
python-pysam))
(native-inputs
(list python-cython python-pytest))
(home-page "https://t-neumann.github.io/slamdunk/")
(synopsis "Streamline SLAM-seq analysis with high sensitivity")
(description "SlamDunk is a fully automated tool for automated, robust,
scalable and reproducible SLAMseq data analysis. Diagnostic plotting features
and a MultiQC plugin will make your SLAMseq data ready for immediate QA and
interpretation.")
(license license:agpl3+)))
(define-public python-taggd
(package
(name "python-taggd")