gnu: Add r-chromstar.

* gnu/packages/bioconductor.scm (r-chromstar): New variable.

Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
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Hong Li 2021-03-22 14:21:47 +01:00 committed by Ricardo Wurmus
parent 1f958631ef
commit 0ff888108a
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@ -10643,6 +10643,44 @@ (define-public r-snpstats
the earlier snpMatrix package, allowing for uncertainty in genotypes.")
(license license:gpl3)))
(define-public r-chromstar
(package
(name "r-chromstar")
(version "1.16.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "chromstaR" version))
(sha256
(base32
"0vgpb7g2cncdn82hia2yzzachyns2zbd7906662g990qjnp2xlm1"))))
(properties `((upstream-name . "chromstaR")))
(build-system r-build-system)
(propagated-inputs
`(("r-bamsignals" ,r-bamsignals)
("r-biocgenerics" ,r-biocgenerics)
("r-chromstardata" ,r-chromstardata)
("r-doparallel" ,r-doparallel)
("r-foreach" ,r-foreach)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicalignments" ,r-genomicalignments)
("r-genomicranges" ,r-genomicranges)
("r-ggplot2" ,r-ggplot2)
("r-iranges" ,r-iranges)
("r-mvtnorm" ,r-mvtnorm)
("r-reshape2" ,r-reshape2)
("r-rsamtools" ,r-rsamtools)
("r-s4vectors" ,r-s4vectors)))
(native-inputs `(("r-knitr" ,r-knitr)))
(home-page "https://github.com/ataudt/chromstaR")
(synopsis "Chromatin state analysis for ChIP-Seq data")
(description
"This package implements functions for combinatorial and differential
analysis of ChIP-seq data. It includes uni- and multivariate peak-calling,
export to genome browser viewable files, and functi ons for enrichment
analyses.")
(license license:artistic2.0)))
(define-public r-sushi
(package
(name "r-sushi")