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gnu: Add r-chromstar.
* gnu/packages/bioconductor.scm (r-chromstar): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
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@ -10643,6 +10643,44 @@ (define-public r-snpstats
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the earlier snpMatrix package, allowing for uncertainty in genotypes.")
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(license license:gpl3)))
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(define-public r-chromstar
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(package
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(name "r-chromstar")
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(version "1.16.0")
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(source
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(origin
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(method url-fetch)
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(uri (bioconductor-uri "chromstaR" version))
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(sha256
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(base32
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"0vgpb7g2cncdn82hia2yzzachyns2zbd7906662g990qjnp2xlm1"))))
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(properties `((upstream-name . "chromstaR")))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-bamsignals" ,r-bamsignals)
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("r-biocgenerics" ,r-biocgenerics)
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("r-chromstardata" ,r-chromstardata)
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("r-doparallel" ,r-doparallel)
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("r-foreach" ,r-foreach)
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("r-genomeinfodb" ,r-genomeinfodb)
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("r-genomicalignments" ,r-genomicalignments)
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("r-genomicranges" ,r-genomicranges)
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("r-ggplot2" ,r-ggplot2)
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("r-iranges" ,r-iranges)
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("r-mvtnorm" ,r-mvtnorm)
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("r-reshape2" ,r-reshape2)
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("r-rsamtools" ,r-rsamtools)
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("r-s4vectors" ,r-s4vectors)))
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(native-inputs `(("r-knitr" ,r-knitr)))
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(home-page "https://github.com/ataudt/chromstaR")
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(synopsis "Chromatin state analysis for ChIP-Seq data")
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(description
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"This package implements functions for combinatorial and differential
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analysis of ChIP-seq data. It includes uni- and multivariate peak-calling,
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export to genome browser viewable files, and functi ons for enrichment
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analyses.")
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(license license:artistic2.0)))
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(define-public r-sushi
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(package
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(name "r-sushi")
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