mirror of
https://git.in.rschanz.org/ryan77627/guix.git
synced 2024-12-24 05:18:07 -05:00
gnu: Add r-cellid.
* gnu/packages/bioconductor.scm (r-cellid): New variable.
This commit is contained in:
parent
6398fa7860
commit
11651fbf7f
1 changed files with 45 additions and 0 deletions
|
@ -1436,6 +1436,51 @@ (define-public r-celldex
|
|||
single-cell data or deconvolution of bulk RNA-seq.")
|
||||
(license license:gpl3)))
|
||||
|
||||
(define-public r-cellid
|
||||
(package
|
||||
(name "r-cellid")
|
||||
(version "1.8.1")
|
||||
(source (origin
|
||||
(method url-fetch)
|
||||
(uri (bioconductor-uri "CelliD" version))
|
||||
(sha256
|
||||
(base32
|
||||
"0vigvqjrlqbi5kviaj8qvyq3v8afgbc5pjrz7zmx2ckf4hdp0g03"))))
|
||||
(properties `((upstream-name . "CelliD")))
|
||||
(build-system r-build-system)
|
||||
(propagated-inputs
|
||||
(list r-data-table
|
||||
r-biocparallel
|
||||
r-fastmatch
|
||||
r-fgsea
|
||||
r-ggplot2
|
||||
r-glue
|
||||
r-irlba
|
||||
r-matrix
|
||||
r-matrixstats
|
||||
r-pbapply
|
||||
r-rcpp
|
||||
r-rcpparmadillo
|
||||
r-reticulate
|
||||
r-rtsne
|
||||
r-seurat
|
||||
r-stringr
|
||||
r-tictoc
|
||||
r-singlecellexperiment
|
||||
r-summarizedexperiment
|
||||
r-umap))
|
||||
(native-inputs (list r-knitr r-scater))
|
||||
(home-page "https://bioconductor.org/packages/CelliD")
|
||||
(synopsis
|
||||
"Single cell gene signature extraction using multiple correspondence analysis")
|
||||
(description
|
||||
"CelliD is a clustering-free method for extracting per-cell gene
|
||||
signatures from scRNA-seq. CelliD allows unbiased cell identity recognition
|
||||
across different donors, tissues-of-origin, model organisms and single-cell
|
||||
omics protocols. The package can also be used to explore functional pathways
|
||||
enrichment in single cell data.")
|
||||
(license license:gpl3)))
|
||||
|
||||
(define-public r-champdata
|
||||
(package
|
||||
(name "r-champdata")
|
||||
|
|
Loading…
Reference in a new issue