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gnu: r-seqpattern: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-seqpattern): Move from here...
* gnu/packages/bioconductor.scm (r-seqpattern): ...to here.
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zimoun 2021-05-21 22:25:42 +02:00 committed by Ricardo Wurmus
parent b832fddbfc
commit 14fb30e5f6
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2 changed files with 27 additions and 27 deletions
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27
gnu/packages/bioconductor.scm
View file

@ -2860,6 +2860,33 @@ (define-public r-samr
;; Any version of the LGPL
(license license:lgpl3+)))
(define-public r-seqpattern
(package
(name "r-seqpattern")
(version "1.22.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "seqPattern" version))
(sha256
(base32
"0j68n6fwycxjpl2va5fw7ajb123n758s2pq997d76dysxghmrlzq"))))
(properties
`((upstream-name . "seqPattern")))
(build-system r-build-system)
(propagated-inputs
`(("r-biostrings" ,r-biostrings)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-kernsmooth" ,r-kernsmooth)
("r-plotrix" ,r-plotrix)))
(home-page "https://bioconductor.org/packages/seqPattern")
(synopsis "Visualising oligonucleotide patterns and motif occurrences")
(description
"This package provides tools to visualize oligonucleotide patterns and
sequence motif occurrences across a large set of sequences centred at a common
reference point and sorted by a user defined feature.")
(license license:gpl3+)))
(define-public r-shortread
(package
(name "r-shortread")

27
gnu/packages/bioinformatics.scm
View file

@ -7976,33 +7976,6 @@ (define-public r-go-db
information about the latest version of the Gene Ontologies.")
(license license:artistic2.0)))
(define-public r-seqpattern
(package
(name "r-seqpattern")
(version "1.22.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "seqPattern" version))
(sha256
(base32
"0j68n6fwycxjpl2va5fw7ajb123n758s2pq997d76dysxghmrlzq"))))
(properties
`((upstream-name . "seqPattern")))
(build-system r-build-system)
(propagated-inputs
`(("r-biostrings" ,r-biostrings)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-kernsmooth" ,r-kernsmooth)
("r-plotrix" ,r-plotrix)))
(home-page "https://bioconductor.org/packages/seqPattern")
(synopsis "Visualising oligonucleotide patterns and motif occurrences")
(description
"This package provides tools to visualize oligonucleotide patterns and
sequence motif occurrences across a large set of sequences centred at a common
reference point and sorted by a user defined feature.")
(license license:gpl3+)))
(define-public r-spp
(package
(name "r-spp")