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gnu: Add r-htqpcr.

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* gnu/packages/bioconductor.scm (r-htqpcr): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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zimoun 2019-10-08 19:35:16 +02:00 committed by Ludovic Courtès
parent 8ba94edd8f
commit 16e2e4f27b
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gnu/packages/bioconductor.scm
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@ -2,6 +2,7 @@
;;; Copyright © 2016, 2017, 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2016, 2017, 2018 Roel Janssen <roel@gnu.org>
;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2019 Simon Tournier <zimon.toutoune@gmail.com>
;;;
;;; This file is part of GNU Guix.
;;;
@ -6078,3 +6079,36 @@ (define-public r-variancepartition
package includes dream differential expression analysis for repeated
measures.")
(license license:gpl2+)))
(define-public r-htqpcr
(package
(name "r-htqpcr")
(version "1.38.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "HTqPCR" version))
(sha256
(base32
"09xgj797f0qsbm4jswxw7ijjwa4jxg06bfkq66xfhbvascyyrhg7"))))
(properties `((upstream-name . "HTqPCR")))
(build-system r-build-system)
(propagated-inputs
`(("r-affy" ,r-affy)
("r-biobase" ,r-biobase)
("r-gplots" ,r-gplots)
("r-limma" ,r-limma)
("r-rcolorbrewer" ,r-rcolorbrewer)))
(home-page "http://www.ebi.ac.uk/bertone/software")
(synopsis "Automated analysis of high-throughput qPCR data")
(description
"Analysis of Ct values from high throughput quantitative real-time
PCR (qPCR) assays across multiple conditions or replicates. The input data
can be from spatially-defined formats such ABI TaqMan Low Density Arrays or
OpenArray; LightCycler from Roche Applied Science; the CFX plates from Bio-Rad
Laboratories; conventional 96- or 384-well plates; or microfluidic devices
such as the Dynamic Arrays from Fluidigm Corporation. HTqPCR handles data
loading, quality assessment, normalization, visualization and parametric or
non-parametric testing for statistical significance in Ct values between
features (e.g. genes, microRNAs).")
(license license:artistic2.0)))