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gnu: Add r-msmstests.

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* gnu/packages/bioconductor.scm (r-msmstests): New variable.
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zimoun 2020-12-04 02:08:41 +01:00 committed by Ricardo Wurmus
parent e520c68fa9
commit 16f16b5e21
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gnu/packages/bioconductor.scm
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@ -9016,3 +9016,35 @@ (define-public r-msmseda
"Exploratory data analysis to assess the quality of a set of LC-MS/MS
experiments, and visualize de influence of the involved factors.")
(license license:gpl2)))
(define-public r-msmstests
(package
(name "r-msmstests")
(version "1.28.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "msmsTests" version))
(sha256
(base32
"1zsnmzj1qvjdwz7mwg9wrsk5iskpqs0f6jccqn8mxy9dgkskmp0j"))))
(properties `((upstream-name . "msmsTests")))
(build-system r-build-system)
(propagated-inputs
`(("r-edger" ,r-edger)
("r-msmseda" ,r-msmseda)
("r-msnbase" ,r-msnbase)
("r-qvalue" ,r-qvalue)))
(home-page
"https://bioconductor.org/packages/msmsTests")
(synopsis "Differential LC-MS/MS expression tests")
(description
"This packages provides statistical tests for label-free LC-MS/MS data
by spectral counts, to discover differentially expressed proteins between two
biological conditions. Three tests are available: Poisson GLM regression,
quasi-likelihood GLM regression, and the negative binomial of the edgeR
package.The three models admit blocking factors to control for nuissance
variables.To assure a good level of reproducibility a post-test filter is
available, where we may set the minimum effect size considered biologicaly
relevant, and the minimum expression of the most abundant condition.")
(license license:gpl2)))