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gnu: r-bisquerna: Move to (gnu packages bioconductor).

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* gnu/packages/cran.scm (r-bisquerna): Move this variable from here...
* gnu/packages/bioconductor.scm (r-bisquerna): ...to here.
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zimoun 2021-03-17 21:14:12 +01:00 committed by Ricardo Wurmus
parent 9287c6d8f5
commit 172b85aa99
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2 changed files with 26 additions and 25 deletions
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26
gnu/packages/bioconductor.scm
View file

@ -1315,6 +1315,32 @@ (define-public r-iranges
possible.")
(license license:artistic2.0)))
;; This is a CRAN package, but it depends on r-biobase from Bioconductor.
(define-public r-bisquerna
(package
(name "r-bisquerna")
(version "1.0.4")
(source (origin
(method url-fetch)
(uri (cran-uri "BisqueRNA" version))
(sha256
(base32
"01g34n87ml7n3pck77497ddgbv3rr5p4153ac8ninpgjijlm3jw2"))))
(properties `((upstream-name . "BisqueRNA")))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-limsolve" ,r-limsolve)))
(home-page "https://www.biorxiv.org/content/10.1101/669911v1")
(synopsis "Decomposition of bulk expression with single-cell sequencing")
(description "This package provides tools to accurately estimate cell type
abundances from heterogeneous bulk expression. A reference-based method
utilizes single-cell information to generate a signature matrix and
transformation of bulk expression for accurate regression based estimates.
A marker-based method utilizes known cell-specific marker genes to measure
relative abundances across samples.")
(license license:gpl3)))
;; This is a CRAN package, but it depends on r-bsgenome-hsapiens-ucsc-hg19
;; from Bioconductor.
(define-public r-deconstructsigs

25
gnu/packages/cran.scm
View file

@ -2839,31 +2839,6 @@ (define-public r-bindrcpp
bindings that call a C++ function.")
(license license:expat)))
(define-public r-bisquerna
(package
(name "r-bisquerna")
(version "1.0.4")
(source (origin
(method url-fetch)
(uri (cran-uri "BisqueRNA" version))
(sha256
(base32
"01g34n87ml7n3pck77497ddgbv3rr5p4153ac8ninpgjijlm3jw2"))))
(properties `((upstream-name . "BisqueRNA")))
(build-system r-build-system)
(propagated-inputs
`(("r-biobase" ,r-biobase)
("r-limsolve" ,r-limsolve)))
(home-page "https://www.biorxiv.org/content/10.1101/669911v1")
(synopsis "Decomposition of bulk expression with single-cell sequencing")
(description "This package provides tools to accurately estimate cell type
abundances from heterogeneous bulk expression. A reference-based method
utilizes single-cell information to generate a signature matrix and
transformation of bulk expression for accurate regression based estimates.
A marker-based method utilizes known cell-specific marker genes to measure
relative abundances across samples.")
(license license:gpl3)))
(define-public r-auc
(package
(name "r-auc")