gnu: Add r-cytonorm.

* gnu/packages/bioinformatics.scm (r-cytonorm): New variable.
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Ricardo Wurmus 2021-08-27 13:24:19 +02:00
parent 63a5090869
commit 17c765e2e1
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@ -14903,3 +14903,42 @@ (define-public r-spectre
integration, exploration, and analysis of high-dimensional single-cell integration, exploration, and analysis of high-dimensional single-cell
cytometry and imaging data.") cytometry and imaging data.")
(license license:expat)))) (license license:expat))))
(define-public r-cytonorm
(let ((commit "e4b9d343ee65db3c422800f1db3e77c25abde987")
(revision "1"))
(package
(name "r-cytonorm")
(version (git-version "0.0.7" revision commit))
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/saeyslab/CytoNorm")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"0h2rdy15i4zymd4dv60n5w0frbsdbmzpv99dgm0l2dn041qv7fah"))))
(properties `((upstream-name . "CytoNorm")))
(build-system r-build-system)
(propagated-inputs
`(("r-cytoml" ,r-cytoml)
("r-dplyr" ,r-dplyr)
("r-emdist" ,r-emdist)
("r-flowcore" ,r-flowcore)
("r-flowsom" ,r-flowsom)
("r-flowworkspace" ,r-flowworkspace)
("r-ggplot2" ,r-ggplot2)
("r-gridextra" ,r-gridextra)
("r-pheatmap" ,r-pheatmap)
("r-stringr" ,r-stringr)))
(home-page "https://github.com/saeyslab/CytoNorm")
(synopsis "Normalize cytometry data measured across multiple batches")
(description
"This package can be used to normalize cytometry samples when a control
sample is taken along in each of the batches. This is done by first
identifying multiple clusters/cell types, learning the batch effects from the
control samples and applying quantile normalization on all markers of
interest.")
(license license:gpl2+))))