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gnu: Add Ribotaper.
* gnu/packages/bioinformatics.scm (ribotaper): New variable.
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@ -273,6 +273,36 @@ (define-public bedtools-2.18
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(base32
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"05vrnr8yp7swfagshzpgqmzk1blnwnq8pq5pckzi1m26w98d63vf"))))))
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(define-public ribotaper
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(package
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(name "ribotaper")
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(version "1.3.1")
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(source (origin
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(method url-fetch)
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(uri (string-append "https://ohlerlab.mdc-berlin.de/"
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"files/RiboTaper/RiboTaper_Version_"
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version ".tar.gz"))
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(sha256
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(base32
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"0ykjbps1y3z3085q94npw8i9x5gldc6shy8vlc08v76zljsm07hv"))))
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(build-system gnu-build-system)
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(inputs
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`(("bedtools" ,bedtools-2.18)
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("samtools" ,samtools-0.1)
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("r" ,r)
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("r-foreach" ,r-foreach)
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("r-xnomial" ,r-xnomial)
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("r-domc" ,r-domc)
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("r-multitaper" ,r-multitaper)
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("r-seqinr" ,r-seqinr)))
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(home-page "https://ohlerlab.mdc-berlin.de/software/RiboTaper_126/")
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(synopsis "Define translated ORFs using ribosome profiling data")
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(description
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"Ribotaper is a method for defining translated @dfn{open reading
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frames} (ORFs) using ribosome profiling (ribo-seq) data. This package
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provides the Ribotaper pipeline.")
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(license license:gpl3+)))
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(define-public bioawk
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(package
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(name "bioawk")
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