gnu: Add r-regioner.

* gnu/packages/bioconductor.scm (r-regioner): New variable.

Signed-off-by: Leo Famulari <leo@famulari.name>
This commit is contained in:
Roel Janssen 2018-03-29 14:20:20 +02:00 committed by Leo Famulari
parent f342bb58fe
commit 183ce98849
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@ -1,5 +1,6 @@
;;; GNU Guix --- Functional package management for GNU ;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2018 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2018 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2018 Roel Janssen <roel@gnu.org>
;;; ;;;
;;; This file is part of GNU Guix. ;;; This file is part of GNU Guix.
;;; ;;;
@ -21,7 +22,9 @@ (define-module (gnu packages bioconductor)
#:use-module (guix packages) #:use-module (guix packages)
#:use-module (guix download) #:use-module (guix download)
#:use-module (guix build-system r) #:use-module (guix build-system r)
#:use-module (gnu packages)) #:use-module (gnu packages)
#:use-module (gnu packages statistics)
#:use-module (gnu packages bioinformatics))
(define-public r-hpar (define-public r-hpar
(package (package
@ -40,3 +43,30 @@ (define-public r-hpar
(description "This package provides a simple interface to and data from (description "This package provides a simple interface to and data from
the Human Protein Atlas project.") the Human Protein Atlas project.")
(license license:artistic2.0))) (license license:artistic2.0)))
(define-public r-regioner
(package
(name "r-regioner")
(version "1.10.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "regioneR" version))
(sha256
(base32
"1vprp3l929hwzmvgskbhawfgnrymwc9n2rxd16rgagnv1dxnjxfp"))))
(properties `((upstream-name . "regioneR")))
(build-system r-build-system)
(propagated-inputs
`(("r-memoise" ,r-memoise)
("r-genomicranges" ,r-genomicranges)
("r-bsgenome" ,r-bsgenome)
("r-rtracklayer" ,r-rtracklayer)
("r-genomeinfodb" ,r-genomeinfodb)
("r-iranges" ,r-iranges)))
(home-page "https://bioconductor.org/packages/regioneR/")
(synopsis "Association analysis of genomic regions")
(description "This package offers a statistical framework based on
customizable permutation tests to assess the association between genomic
region sets and other genomic features.")
(license license:artistic2.0)))