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gnu: bppsuite: Update to 2.4.1.

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* gnu/packages/bioinformatics.scm (bppsuite): Update to 2.4.1.
[source]: Remove the commit and use the release version. Changed to the github
repo.
[arguments]: Remove the disabled parallel-build.
[inputs]: Use list.
[home-page]: Changed to github page.
This commit is contained in:
Mădălin Ionel Patrașcu 2023-04-21 02:03:58 +02:00 committed by Ricardo Wurmus
parent 2a20acf24b
commit 184658e282
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GPG key ID: 197A5888235FACAC
1 changed files with 24 additions and 32 deletions
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gnu/packages/bioinformatics.scm
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@ -2367,40 +2367,32 @@ (define-public bpp-seq-omics
(license license:cecill))) (license license:cecill)))
(define-public bppsuite (define-public bppsuite
;; The last release was in 2014 and the recommended way to install from source
;; is to clone the git repository, so we do this.
;; http://biopp.univ-montp2.fr/wiki/index.php/Main_Page
(let ((commit "c516147f57aa50961121cd505bed52cd7603698b"))
(package (package
(name "bppsuite") (name "bppsuite")
(version (string-append "2.2.0-1." (string-take commit 7))) (version "2.4.1")
(source (origin (source (origin
(method git-fetch) (method git-fetch)
(uri (git-reference (uri (git-reference
(url "http://biopp.univ-montp2.fr/git/bppsuite") (url "https://github.com/BioPP/bppsuite")
(commit commit))) (commit (string-append "v" version))))
(file-name (string-append name "-" version "-checkout")) (file-name (git-file-name name version))
(sha256 (sha256
(base32 (base32
"1y87pxvw0jxjizhq2dr9g2r91md45k1p9ih2sl1yy1y3p934l2kb")))) "1wdwcgczqbc3m116vakvi0129wm3acln3cfc7ivqnalwvi6lrpds"))))
(build-system cmake-build-system) (build-system cmake-build-system)
(arguments (arguments
`(#:parallel-build? #f (list #:tests? #f)) ; There are no tests.
#:tests? #f)) ; There are no tests.
(native-inputs (native-inputs
(list groff man-db texinfo)) (list groff man-db texinfo))
(inputs (inputs
`(("bpp-core" ,bpp-core) (list bpp-core bpp-seq bpp-phyl bpp-popgen))
("bpp-seq" ,bpp-seq) (home-page "https://github.com/BioPP")
("bpp-phyl" ,bpp-phyl)
("bpp-phyl" ,bpp-popgen)))
(home-page "http://biopp.univ-montp2.fr")
(synopsis "Bioinformatics tools written with the Bio++ libraries") (synopsis "Bioinformatics tools written with the Bio++ libraries")
(description (description
"Bio++ is a set of C++ libraries for Bioinformatics, including sequence "Bio++ is a set of C++ libraries for Bioinformatics, including sequence
analysis, phylogenetics, molecular evolution and population genetics. This analysis, phylogenetics, molecular evolution and population genetics. This
package provides command line tools using the Bio++ library.") package provides command line tools using the Bio++ library.")
(license license:cecill-c)))) (license license:cecill-c)))
(define-public blast+ (define-public blast+
(package (package