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gnu: pigx-sars-cov2-ww: Update to 0.0.4.

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* gnu/packages/bioinformatics.scm (pigx-sars-cov2-ww): Update to 0.0.4.
[inputs]: Add bbmap, bedtools, fastp, ivar, and r-r-utils.
This commit is contained in:
Ricardo Wurmus 2021-12-04 12:42:51 +01:00
parent ce9bfcddb5
commit 18a85213ae
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GPG key ID: 197A5888235FACAC
1 changed files with 7 additions and 2 deletions
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9
gnu/packages/bioinformatics.scm
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@ -11217,7 +11217,7 @@ (define-public pigx-scrnaseq
(define-public pigx-sars-cov2-ww
(package
(name "pigx-sars-cov2-ww")
(version "0.0.3")
(version "0.0.4")
(source (origin
(method url-fetch)
(uri (string-append "https://github.com/BIMSBbioinfo/pigx_sarscov2_ww/"
@ -11225,7 +11225,7 @@ (define-public pigx-sars-cov2-ww
"/pigx_sars-cov2-ww-" version ".tar.gz"))
(sha256
(base32
"1hhdbwsnl0d37lrmisw5hr630xr8s41qvxflm05anh11rj8n22yw"))
"0axnmz4d8zgir888mc0cilcq4m3v41xmjmpp3w3444lciwnxydvs"))
(patches (search-patches "pigx-sars-cov2-ww-no-citeproc.patch"))))
(build-system gnu-build-system)
(arguments
@ -11239,9 +11239,13 @@ (define-public pigx-sars-cov2-ww
("autoconf" ,autoconf)))
(inputs
`(("bash-minimal" ,bash-minimal)
("bbmap" ,bbmap)
("bedtools" ,bedtools)
("bwa" ,bwa)
("ensembl-vep" ,ensembl-vep)
("fastp" ,fastp)
("fastqc" ,fastqc)
("ivar" ,ivar)
("kraken2" ,kraken2)
("krona-tools" ,krona-tools)
("lofreq" ,lofreq)
@ -11257,6 +11261,7 @@ (define-public pigx-sars-cov2-ww
("r-minimal" ,r-minimal)
("r-plotly" ,r-plotly)
("r-qpcr" ,r-qpcr)
("r-r-utils" ,r-r-utils)
("r-reshape2" ,r-reshape2)
("r-rmarkdown" ,r-rmarkdown)
("r-stringr" ,r-stringr)