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gnu: Add r-mixomics.

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* gnu/packages/bioconductor.scm (r-mixomics): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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zimoun 2019-07-24 20:22:03 +02:00 committed by Ricardo Wurmus
parent 1502751b32
commit 1adb9cbc5e
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1 changed files with 42 additions and 0 deletions
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gnu/packages/bioconductor.scm
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@ -4932,3 +4932,45 @@ (define-public r-flowsom
"FlowSOM offers visualization options for cytometry data, by using
self-organizing map clustering and minimal spanning trees.")
(license license:gpl2+)))
(define-public r-mixomics
(package
(name "r-mixomics")
(version "6.8.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "mixOmics" version))
(sha256
(base32
"1f08jx35amn3sfcmqb96mjxxsm6dnpzhff625z758x1992wj4zsk"))))
(properties `((upstream-name . "mixOmics")))
(build-system r-build-system)
(propagated-inputs
`(("r-corpcor" ,r-corpcor)
("r-dplyr" ,r-dplyr)
("r-ellipse" ,r-ellipse)
("r-ggplot2" ,r-ggplot2)
("r-gridextra" ,r-gridextra)
("r-igraph" ,r-igraph)
("r-lattice" ,r-lattice)
("r-mass" ,r-mass)
("r-matrixstats" ,r-matrixstats)
("r-rarpack" ,r-rarpack)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-reshape2" ,r-reshape2)
("r-tidyr" ,r-tidyr)))
(home-page "http://www.mixOmics.org")
(synopsis "Multivariate methods for exploration of biological datasets")
(description
"mixOmics offers a wide range of multivariate methods for the exploration
and integration of biological datasets with a particular focus on variable
selection. The package proposes several sparse multivariate models we have
developed to identify the key variables that are highly correlated, and/or
explain the biological outcome of interest. The data that can be analysed
with mixOmics may come from high throughput sequencing technologies, such as
omics data (transcriptomics, metabolomics, proteomics, metagenomics etc) but
also beyond the realm of omics (e.g. spectral imaging). The methods
implemented in mixOmics can also handle missing values without having to
delete entire rows with missing data.")
(license license:gpl2+)))