ryan77627/guix
1
0
Fork 0
mirror of https://git.in.rschanz.org/ryan77627/guix.git synced 2025-01-26 04:29:25 -05:00
Code Issues Projects Releases Packages Wiki Activity Actions

gnu: Add bart.

Browse source 
* gnu/packages/image-processing.scm (bart): New variable.
This commit is contained in:
Ricardo Wurmus 2022-04-26 16:43:47 +02:00
parent 58f3727767
commit 1c3c00a8a1
No known key found for this signature in database
GPG key ID: 197A5888235FACAC
1 changed files with 52 additions and 1 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

53
gnu/packages/image-processing.scm
View file

@ -1,6 +1,6 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2017 John Darrington <jmd@gnu.org>
;;; Copyright © 2017, 2019 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2017, 2019, 2022 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2014, 2021-2022 Ludovic Courtès <ludo@gnu.org>
;;; Copyright © 2014 Mark H Weaver <mhw@netris.org>
;;; Copyright © 2016 Eric Bavier <bavier@member.fsf.org>
@ -38,6 +38,7 @@
(define-module (gnu packages image-processing)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix packages)
#:use-module (guix gexp)
#:use-module (guix utils)
#:use-module (guix download)
#:use-module (guix git-download)
@ -69,6 +70,7 @@ (define-module (gnu packages image-processing)
#:use-module (gnu packages icu4c)
#:use-module (gnu packages image)
#:use-module (gnu packages imagemagick)
#:use-module (gnu packages linux)
#:use-module (gnu packages maths)
#:use-module (gnu packages pdf)
#:use-module (gnu packages perl)
@ -91,6 +93,55 @@ (define-module (gnu packages image-processing)
#:use-module (ice-9 match)
#:use-module (srfi srfi-1))
;; TODO: this is not reproducible.
(define-public bart
(package
(name "bart")
(version "0.7.00")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/mrirecon/bart")
(commit "d1b0e576c3f759089915565d5bf57832acf7b03e")))
(file-name (git-file-name name version))
(sha256
(base32 "159rj3agr9pb9lg38b56rnw3d8wcbkmb2n718z26zpy4c6a6d9rn"))))
(build-system gnu-build-system)
(arguments
(list
#:test-target "utest"
#:make-flags #~(list
(string-append "PREFIX=" #$output)
"OPENBLAS=1"
"SCALAPACK=1"
(string-append "BLAS_BASE=" #$(this-package-input "openblas"))
(string-append "FFTW_BASE=" #$(this-package-input "fftw")))
#:phases
#~(modify-phases %standard-phases
(delete 'configure)
(add-after 'unpack 'patch-/bin/bash
(lambda _
(substitute* "tests/pics.mk"
(("/bin/bash") (which "bash"))))))))
(inputs
(list fftw
fftwf
libpng
openblas
python
scalapack))
(native-inputs
(list doxygen
util-linux)) ;for flock
(home-page "https://mrirecon.github.io/bart/")
(synopsis "Toolbox for computational magnetic resonance imaging")
(description "The Berkeley Advanced Reconstruction Toolbox (BART) is an
image-reconstruction framework for Computational Magnetic Resonance Imaging.
The tools in this software implement various reconstruction algorithms for
Magnetic Resonance Imaging.")
(license license:bsd-3)))
(define-public dcmtk
(package
(name "dcmtk")