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gnu: Add python-flint.
* gnu/packages/algebra.scm (python-flint): New variable. * gnu/packages/patches/python-flint-includes.patch: New file. * gnu/local.mk (dist_patch_DATA): Register the patch.
This commit is contained in:
Andreas Enge
parent
835dada6e4
commit
1d6589db81
3 changed files with 166 additions and 0 deletions
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@ -1176,6 +1176,7 @@ dist_patch_DATA = \
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%D%/packages/patches/python2-larch-coverage-4.0a6-compatibility.patch \
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%D%/packages/patches/python-configobj-setuptools.patch \
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%D%/packages/patches/python-faker-fix-build-32bit.patch \
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%D%/packages/patches/python-flint-includes.patch \
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%D%/packages/patches/python-mox3-python3.6-compat.patch \
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%D%/packages/patches/python-testtools.patch \
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%D%/packages/patches/python-paste-remove-timing-test.patch \
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@ -43,6 +43,7 @@ (define-module (gnu packages algebra)
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#:use-module (gnu packages multiprecision)
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#:use-module (gnu packages perl)
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#:use-module (gnu packages python)
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#:use-module (gnu packages python-xyz)
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#:use-module (gnu packages readline)
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#:use-module (gnu packages shells)
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#:use-module (gnu packages tex)
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@ -52,6 +53,7 @@ (define-module (gnu packages algebra)
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#:use-module (guix build-system ant)
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#:use-module (guix build-system gnu)
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#:use-module (guix build-system cmake)
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#:use-module (guix build-system python)
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#:use-module (guix download)
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#:use-module (guix git-download)
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#:use-module ((guix licenses) #:prefix license:)
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@ -421,6 +423,38 @@ (define-public arb
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(license license:lgpl2.1+)
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(home-page "http://fredrikj.net/arb/")))
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(define-public python-flint
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(package
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(name "python-flint")
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(version "0.3.0")
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/fredrik-johansson/python-flint.git")
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(commit version)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"1v0anazbj1cfi68nl2j6dbd31kgkc1563xmr0zk5xk3xj78569pw"))
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(patches (search-patches "python-flint-includes.patch"))))
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(build-system python-build-system)
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(native-inputs
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`(("python-cython" ,python-cython)))
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(propagated-inputs
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`(("python-numpy" ,python-numpy)))
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(inputs
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`(("arb" ,arb)
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("flint" ,flint)))
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(synopsis "Python module wrapping ARB and FLINT")
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(description
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"Python-flint is a Python extension module wrapping FLINT
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(Fast Library for Number Theory) and Arb (arbitrary-precision ball
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arithmetic). It supports integers, rationals, modular integers,
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real and complex ball arithmetic, polynomials and matrices over all
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these types and other mathematical functions.")
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(license license:expat)
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(home-page "http://fredrikj.net/python-flint/")))
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(define-public ntl
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(package
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(name "ntl")
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131
gnu/packages/patches/python-flint-includes.patch
Normal file
131
gnu/packages/patches/python-flint-includes.patch
Normal file
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@ -0,0 +1,131 @@
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The following patch, authored by Andreas Enge, looks for the flint include
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files in the correct subdirectory.
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diff -u -r python-flint-old/src/flint.pxd python-flint-new/src/flint.pxd
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--- python-flint-old/src/flint.pxd 2019-03-19 10:26:11.055748626 +0100
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+++ python-flint-new/src/flint.pxd 2019-03-19 10:35:23.269341203 +0100
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@@ -27,7 +27,7 @@
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ctypedef long fmpz_struct
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-cdef extern from "flint.h":
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+cdef extern from "flint/flint.h":
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ctypedef void * flint_rand_t
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void flint_randinit(flint_rand_t state)
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void flint_randclear(flint_rand_t state)
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@@ -35,7 +35,7 @@
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long flint_get_num_threads()
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void flint_cleanup()
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-cdef extern from "nmod_vec.h":
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+cdef extern from "flint/nmod_vec.h":
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ctypedef struct nmod_t:
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mp_limb_t n
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mp_limb_t ninv
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@@ -47,7 +47,7 @@
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mp_limb_t nmod_mul(mp_limb_t a, mp_limb_t b, nmod_t mod)
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mp_limb_t nmod_div(mp_limb_t a, mp_limb_t b, nmod_t mod)
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-cdef extern from "nmod_poly.h":
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+cdef extern from "flint/nmod_poly.h":
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ctypedef struct nmod_poly_struct:
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mp_ptr coeffs
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long alloc
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@@ -129,7 +129,7 @@
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void nmod_poly_factor_init(nmod_poly_factor_t fac)
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void nmod_poly_factor_clear(nmod_poly_factor_t fac)
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-cdef extern from "nmod_mat.h":
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+cdef extern from "flint/nmod_mat.h":
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ctypedef struct nmod_mat_struct:
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mp_limb_t * entries
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long r
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@@ -178,7 +178,7 @@
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long nmod_mat_rref(nmod_mat_t A)
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long nmod_mat_nullspace(nmod_mat_t X, nmod_mat_t A)
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-cdef extern from "fmpz.h":
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+cdef extern from "flint/fmpz.h":
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ctypedef fmpz_struct fmpz_t[1]
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int COEFF_IS_MPZ(fmpz_struct v)
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void fmpz_init(fmpz_t op)
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@@ -268,7 +268,7 @@
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void fmpz_rfac_uiui(fmpz_t r, ulong x, ulong n)
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void fmpz_primorial(fmpz_t res, ulong n)
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-cdef extern from "fmpz_factor.h":
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+cdef extern from "flint/fmpz_factor.h":
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ctypedef struct fmpz_factor_struct:
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int sign
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fmpz_struct * p
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@@ -280,7 +280,7 @@
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void fmpz_factor_clear(fmpz_factor_t factor)
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void fmpz_factor(fmpz_factor_t factor, fmpz_t n)
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-cdef extern from "fmpz_poly.h":
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+cdef extern from "flint/fmpz_poly.h":
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ctypedef struct fmpz_poly_struct:
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fmpz_struct * coeffs
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long alloc
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@@ -390,14 +390,14 @@
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void fmpz_poly_cos_minpoly(fmpz_poly_t, ulong)
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void fmpz_poly_swinnerton_dyer(fmpz_poly_t, ulong)
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-cdef extern from "fmpz_poly_factor.h":
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+cdef extern from "flint/fmpz_poly_factor.h":
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void fmpz_poly_factor_init(fmpz_poly_factor_t fac)
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void fmpz_poly_factor_clear(fmpz_poly_factor_t fac)
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void fmpz_poly_factor_zassenhaus(fmpz_poly_factor_t fac, fmpz_poly_t G)
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void fmpz_poly_factor(fmpz_poly_factor_t fac, fmpz_poly_t G)
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void fmpz_poly_factor_squarefree(fmpz_poly_factor_t fac, fmpz_poly_t G)
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-cdef extern from "fmpz_mat.h":
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+cdef extern from "flint/fmpz_mat.h":
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ctypedef struct fmpz_mat_struct:
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fmpz_struct * entries
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long r
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@@ -448,7 +448,7 @@
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void fmpz_mat_snf(fmpz_mat_t S, const fmpz_mat_t A)
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int fmpz_mat_is_in_snf(const fmpz_mat_t A)
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-cdef extern from "fmpz_lll.h":
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+cdef extern from "flint/fmpz_lll.h":
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ctypedef struct fmpz_lll_struct:
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double delta
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double eta
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@@ -461,7 +461,7 @@
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void fmpz_lll(fmpz_mat_t B, fmpz_mat_t U, const fmpz_lll_t fl)
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-cdef extern from "fmpq.h":
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+cdef extern from "flint/fmpq.h":
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ctypedef struct fmpq_struct:
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fmpz_struct num
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fmpz_struct den
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@@ -506,7 +506,7 @@
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void fmpq_next_signed_minimal(fmpq_t res, fmpq_t x)
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void fmpq_harmonic_ui(fmpq_t res, ulong n)
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-cdef extern from "fmpq_poly.h":
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+cdef extern from "flint/fmpq_poly.h":
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ctypedef struct fmpq_poly_struct:
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fmpz_struct * coeffs
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fmpz_t den
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@@ -620,7 +620,7 @@
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void fmpq_poly_compose_series(fmpq_poly_t res, fmpq_poly_t poly1, fmpq_poly_t poly2, long n)
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void fmpq_poly_revert_series(fmpq_poly_t res, fmpq_poly_t poly1, long n)
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-cdef extern from "fmpq_mat.h":
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+cdef extern from "flint/fmpq_mat.h":
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ctypedef struct fmpq_mat_struct:
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fmpq_struct * entries
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long r
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@@ -672,7 +672,7 @@
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long fmpq_mat_rref(fmpq_mat_t B, fmpq_mat_t A)
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void fmpq_mat_transpose(fmpq_mat_t B, fmpq_mat_t A)
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-cdef extern from "arith.h":
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+cdef extern from "flint/arith.h":
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void arith_number_of_partitions(fmpz_t res, ulong n)
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int arith_moebius_mu(fmpz_t n)
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void arith_divisor_sigma(fmpz_t v, fmpz_t n, ulong k)
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