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gnu: Add r-zinbwave.

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* gnu/packages/bioconductor.scm (r-zinbwave): New variable.
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Roel Janssen 2021-05-26 23:09:06 +02:00
parent 9f27579fb9
commit 1edec0e899
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gnu/packages/bioconductor.scm
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@ -6629,6 +6629,39 @@ (define-public r-webbioc
Currently only Affymetrix oligonucleotide analysis is supported.")
(license license:gpl2+)))
(define-public r-zinbwave
(package
(name "r-zinbwave")
(version "1.12.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "zinbwave" version))
(sha256
(base32
"0m5f0wrk6kg88m41cchjwi4ssi7kr3196m8h9hrhygak964nsd4q"))))
(build-system r-build-system)
(propagated-inputs
`(("r-biocparallel" ,r-biocparallel)
("r-edger" ,r-edger)
("r-genefilter" ,r-genefilter)
("r-matrix" ,r-matrix)
("r-singlecellexperiment" ,r-singlecellexperiment)
("r-softimpute" ,r-softimpute)
("r-summarizedexperiment" ,r-summarizedexperiment)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://bioconductor.org/packages/zinbwave")
(synopsis "Zero-inflated negative binomial model for RNA-seq data")
(description "This package implements a general and flexible zero-inflated
negative binomial model that can be used to provide a low-dimensional
representations of single-cell RNA-seq data. The model accounts for zero
inflation (dropouts), over-dispersion, and the count nature of the data.
The model also accounts for the difference in library sizes and optionally
for batch effects and/or other covariates, avoiding the need for pre-normalize
the data.")
(license license:artistic2.0)))
(define-public r-zfpkm
(package
(name "r-zfpkm")