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gnu: tophat: Remove trailing #T from build phases and snippet.

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* gnu/packages/bioinformatics.scm (tophat)[source]: Remove trailing #T from
snippet.
[arguments]: Remove trailing #T from build phases.
This commit is contained in:
Ricardo Wurmus 2022-12-13 16:30:45 +01:00
parent b339e181e1
commit 23322c2de8
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GPG key ID: 197A5888235FACAC
1 changed files with 3 additions and 6 deletions
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9
gnu/packages/bioinformatics.scm
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@ -2062,8 +2062,7 @@ (define-public tophat
'(begin '(begin
;; Remove bundled SeqAn and samtools ;; Remove bundled SeqAn and samtools
(delete-file-recursively "src/SeqAn-1.4.2") (delete-file-recursively "src/SeqAn-1.4.2")
(delete-file-recursively "src/samtools-0.1.18") (delete-file-recursively "src/samtools-0.1.18")))))
#t))))
(build-system gnu-build-system) (build-system gnu-build-system)
(arguments (arguments
'(#:parallel-build? #f ; not supported '(#:parallel-build? #f ; not supported
@ -2078,8 +2077,7 @@ (define-public tophat
(string-join (string-join
(delete (string-append gcc "/include/c++") (delete (string-append gcc "/include/c++")
(string-split (getenv "CPLUS_INCLUDE_PATH") #\:)) (string-split (getenv "CPLUS_INCLUDE_PATH") #\:))
":")) ":")))))
#t)))
(add-after 'unpack 'use-system-samtools (add-after 'unpack 'use-system-samtools
(lambda* (#:key inputs #:allow-other-keys) (lambda* (#:key inputs #:allow-other-keys)
(substitute* "src/Makefile.in" (substitute* "src/Makefile.in"
@ -2099,8 +2097,7 @@ (define-public tophat
"src/map2gtf.h" "src/map2gtf.h"
"src/align_status.h") "src/align_status.h")
(("#include <bam.h>") "#include <samtools/bam.h>") (("#include <bam.h>") "#include <samtools/bam.h>")
(("#include <sam.h>") "#include <samtools/sam.h>")) (("#include <sam.h>") "#include <samtools/sam.h>")))))))
#t)))))
(native-inputs (native-inputs
`(("gcc@5" ,gcc-5))) ;; doesn't build with later versions `(("gcc@5" ,gcc-5))) ;; doesn't build with later versions
(inputs (inputs