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gnu: Remove python2-warpedlmm.
* gnu/packages/bioinformatics.scm (python2-warpedlmm): Delete variable.
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@ -5366,47 +5366,6 @@ (define-public python2-pbcore
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files and writing bioinformatics applications.")
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(license license:bsd-3)))
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(define-public python2-warpedlmm
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(package
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(name "python2-warpedlmm")
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(version "0.21")
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(source
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(origin
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(method url-fetch)
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(uri (pypi-uri "WarpedLMM" version ".zip"))
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(sha256
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(base32
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"1agfz6zqa8nc6cw47yh0s3y14gkpa9wqazwcj7mwwj3ffnw39p3j"))))
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(build-system python-build-system)
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(arguments
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`(#:python ,python-2 ; requires Python 2.7
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#:tests? #f ; test data are not included
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#:phases
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(modify-phases %standard-phases
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(add-after 'unpack 'use-weave
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(lambda _
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(substitute* "warpedlmm/util/linalg.py"
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(("from scipy import linalg, weave")
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"from scipy import linalg\nimport weave"))
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#t)))))
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(propagated-inputs
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(list python2-scipy
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python2-numpy
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python2-matplotlib
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python2-fastlmm
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python2-pandas
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python2-pysnptools
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python2-weave))
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(native-inputs
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(list python2-mock python2-nose unzip))
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(home-page "https://github.com/PMBio/warpedLMM")
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(synopsis "Implementation of warped linear mixed models")
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(description
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"WarpedLMM is a Python implementation of the warped linear mixed model,
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which automatically learns an optimal warping function (or transformation) for
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the phenotype as it models the data.")
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(license license:asl2.0)))
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(define-public prank
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(package
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(name "prank")
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