gnu: Remove python2-warpedlmm.

* gnu/packages/bioinformatics.scm (python2-warpedlmm): Delete variable.
This commit is contained in:
Maxim Cournoyer 2022-04-29 13:35:58 -04:00
parent bb35b50adc
commit 23e133a907
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@ -5366,47 +5366,6 @@ (define-public python2-pbcore
files and writing bioinformatics applications.")
(license license:bsd-3)))
(define-public python2-warpedlmm
(package
(name "python2-warpedlmm")
(version "0.21")
(source
(origin
(method url-fetch)
(uri (pypi-uri "WarpedLMM" version ".zip"))
(sha256
(base32
"1agfz6zqa8nc6cw47yh0s3y14gkpa9wqazwcj7mwwj3ffnw39p3j"))))
(build-system python-build-system)
(arguments
`(#:python ,python-2 ; requires Python 2.7
#:tests? #f ; test data are not included
#:phases
(modify-phases %standard-phases
(add-after 'unpack 'use-weave
(lambda _
(substitute* "warpedlmm/util/linalg.py"
(("from scipy import linalg, weave")
"from scipy import linalg\nimport weave"))
#t)))))
(propagated-inputs
(list python2-scipy
python2-numpy
python2-matplotlib
python2-fastlmm
python2-pandas
python2-pysnptools
python2-weave))
(native-inputs
(list python2-mock python2-nose unzip))
(home-page "https://github.com/PMBio/warpedLMM")
(synopsis "Implementation of warped linear mixed models")
(description
"WarpedLMM is a Python implementation of the warped linear mixed model,
which automatically learns an optimal warping function (or transformation) for
the phenotype as it models the data.")
(license license:asl2.0)))
(define-public prank
(package
(name "prank")