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gnu: Add r-circus.
* gnu/packages/bioinformatics.scm (r-circus): New variable.
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@ -13275,6 +13275,48 @@ (define-public minimap2
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@end enumerate\n")
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(license license:expat)))
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(define-public r-circus
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(package
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(name "r-circus")
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(version "0.1.5")
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(source
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(origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/BIMSBbioinfo/ciRcus.git")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"0jhjn3ilb057hbf6yzrihj13ifxxs32y7nkby8l3lkm28dg4p97h"))))
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(build-system r-build-system)
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(propagated-inputs
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`(("r-annotationdbi" ,r-annotationdbi)
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("r-annotationhub" ,r-annotationhub)
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("r-biomart" ,r-biomart)
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("r-data-table" ,r-data-table)
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("r-dbi" ,r-dbi)
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("r-genomicfeatures" ,r-genomicfeatures)
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("r-genomicranges" ,r-genomicranges)
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("r-ggplot2" ,r-ggplot2)
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("r-hash" ,r-hash)
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("r-iranges" ,r-iranges)
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("r-rcolorbrewer" ,r-rcolorbrewer)
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("r-rmysql" ,r-rmysql)
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("r-s4vectors" ,r-s4vectors)
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("r-stringr" ,r-stringr)
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("r-summarizedexperiment" ,r-summarizedexperiment)))
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(native-inputs
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`(("r-knitr" ,r-knitr)))
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(home-page "https://github.com/BIMSBbioinfo/ciRcus")
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(synopsis "Annotation, analysis and visualization of circRNA data")
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(description "Circus is an R package for annotation, analysis and
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visualization of circRNA data. Users can annotate their circRNA candidates
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with host genes, gene featrues they are spliced from, and discriminate between
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known and yet unknown splice junctions. Circular-to-linear ratios of circRNAs
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can be calculated, and a number of descriptive plots easily generated.")
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(license license:artistic2.0)))
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(define-public r-loomr
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(let ((commit "df0144bd2bbceca6fadef9edc1bbc5ca672d4739")
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(revision "1"))
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