gnu: Add r-circus.

* gnu/packages/bioinformatics.scm (r-circus): New variable.
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Ricardo Wurmus 2018-08-14 11:10:52 +02:00 committed by Ricardo Wurmus
parent 4646d18eb7
commit 242519ce70
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@ -13275,6 +13275,48 @@ (define-public minimap2
@end enumerate\n")
(license license:expat)))
(define-public r-circus
(package
(name "r-circus")
(version "0.1.5")
(source
(origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/BIMSBbioinfo/ciRcus.git")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
(base32
"0jhjn3ilb057hbf6yzrihj13ifxxs32y7nkby8l3lkm28dg4p97h"))))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-annotationhub" ,r-annotationhub)
("r-biomart" ,r-biomart)
("r-data-table" ,r-data-table)
("r-dbi" ,r-dbi)
("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicranges" ,r-genomicranges)
("r-ggplot2" ,r-ggplot2)
("r-hash" ,r-hash)
("r-iranges" ,r-iranges)
("r-rcolorbrewer" ,r-rcolorbrewer)
("r-rmysql" ,r-rmysql)
("r-s4vectors" ,r-s4vectors)
("r-stringr" ,r-stringr)
("r-summarizedexperiment" ,r-summarizedexperiment)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://github.com/BIMSBbioinfo/ciRcus")
(synopsis "Annotation, analysis and visualization of circRNA data")
(description "Circus is an R package for annotation, analysis and
visualization of circRNA data. Users can annotate their circRNA candidates
with host genes, gene featrues they are spliced from, and discriminate between
known and yet unknown splice junctions. Circular-to-linear ratios of circRNAs
can be calculated, and a number of descriptive plots easily generated.")
(license license:artistic2.0)))
(define-public r-loomr
(let ((commit "df0144bd2bbceca6fadef9edc1bbc5ca672d4739")
(revision "1"))