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gnu: Add r-hmmcopy.

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* gnu/packages/bioconductor.scm (r-hmmcopy): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Change-Id: Iface547e865609427c356277edc904f3aec386d8
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Spencer King 2024-01-30 22:44:57 +00:00 committed by Ricardo Wurmus
parent 7578bf8457
commit 257375d36b
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gnu/packages/bioconductor.scm
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@ -13,6 +13,7 @@
;;; Copyright © 2021 Tim Howes <timhowes@lavabit.com>
;;; Copyright © 2021 Nicolas Vallet <nls.vallet@gmail.com>
;;; Copyright © 2023 Navid Afkhami <Navid.Afkhami@mdc-berlin.de>
;;; Copyright © 2024 Spencer King <spencer.king@geneoscopy.com>
;;;
;;; This file is part of GNU Guix.
;;;
@ -14505,6 +14506,30 @@ (define-public r-dnacopy
abnormal copy number.")
(license license:gpl2+)))
(define-public r-hmmcopy
(package
(name "r-hmmcopy")
(version "1.44.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "HMMcopy" version))
(sha256
(base32 "1nhm8bv6p5zcs7f9p1hqzyjgya6v3q8rl13blh135pk9gxjiad2c"))))
(properties `((upstream-name . "HMMcopy")))
(build-system r-build-system)
(propagated-inputs (list r-data-table))
(home-page "https://bioconductor.org/packages/HMMcopy")
(synopsis
"Copy number prediction with correction for GC and mappability bias for HTS data")
(description
"This package corrects GC and mappability biases for
readcounts (i.e. coverage) in non-overlapping windows of fixed length for
single whole genome samples, yielding a rough estimate of copy number for
further analysis. It was designed for rapid correction of high coverage whole
genome tumor and normal samples.")
(license license:gpl3)))
;; This is a CRAN package, but it uncharacteristically depends on a
;; Bioconductor package.
(define-public r-htscluster