mirror of
https://git.in.rschanz.org/ryan77627/guix.git
synced 2024-12-25 13:58:15 -05:00
gnu: Add r-biocneighbors.
* gnu/packages/bioconductor.scm (r-biocneighbors): New variable.
This commit is contained in:
parent
318bcbc451
commit
286157dc49
1 changed files with 29 additions and 0 deletions
|
@ -939,3 +939,32 @@ (define-public r-ruvseq
|
||||||
of Risso et al. (2014) for the normalization of RNA-Seq read counts between
|
of Risso et al. (2014) for the normalization of RNA-Seq read counts between
|
||||||
samples.")
|
samples.")
|
||||||
(license license:artistic2.0)))
|
(license license:artistic2.0)))
|
||||||
|
|
||||||
|
(define-public r-biocneighbors
|
||||||
|
(package
|
||||||
|
(name "r-biocneighbors")
|
||||||
|
(version "1.0.0")
|
||||||
|
(source
|
||||||
|
(origin
|
||||||
|
(method url-fetch)
|
||||||
|
(uri (bioconductor-uri "BiocNeighbors" version))
|
||||||
|
(sha256
|
||||||
|
(base32
|
||||||
|
"1fsb96acidlxwf0h65xv7fnwdi58ckmq00gmwykrlawh88wgn1ll"))))
|
||||||
|
(properties `((upstream-name . "BiocNeighbors")))
|
||||||
|
(build-system r-build-system)
|
||||||
|
(propagated-inputs
|
||||||
|
`(("r-biocparallel" ,r-biocparallel)
|
||||||
|
("r-rcpp" ,r-rcpp)
|
||||||
|
("r-rcppannoy" ,r-rcppannoy)
|
||||||
|
("r-s4vectors" ,r-s4vectors)))
|
||||||
|
(home-page "https://bioconductor.org/packages/BiocNeighbors")
|
||||||
|
(synopsis "Nearest Neighbor Detection for Bioconductor packages")
|
||||||
|
(description
|
||||||
|
"This package implements exact and approximate methods for nearest
|
||||||
|
neighbor detection, in a framework that allows them to be easily switched
|
||||||
|
within Bioconductor packages or workflows. The exact algorithm is implemented
|
||||||
|
using pre-clustering with the k-means algorithm. Functions are also provided
|
||||||
|
to search for all neighbors within a given distance. Parallelization is
|
||||||
|
achieved for all methods using the BiocParallel framework.")
|
||||||
|
(license license:gpl3)))
|
||||||
|
|
Loading…
Reference in a new issue