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gnu: Add r-biocneighbors.

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* gnu/packages/bioconductor.scm (r-biocneighbors): New variable.
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Ricardo Wurmus 2018-11-07 11:50:52 +01:00
parent 318bcbc451
commit 286157dc49
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29
gnu/packages/bioconductor.scm
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@ -939,3 +939,32 @@ (define-public r-ruvseq
of Risso et al. (2014) for the normalization of RNA-Seq read counts between
samples.")
(license license:artistic2.0)))
(define-public r-biocneighbors
(package
(name "r-biocneighbors")
(version "1.0.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "BiocNeighbors" version))
(sha256
(base32
"1fsb96acidlxwf0h65xv7fnwdi58ckmq00gmwykrlawh88wgn1ll"))))
(properties `((upstream-name . "BiocNeighbors")))
(build-system r-build-system)
(propagated-inputs
`(("r-biocparallel" ,r-biocparallel)
("r-rcpp" ,r-rcpp)
("r-rcppannoy" ,r-rcppannoy)
("r-s4vectors" ,r-s4vectors)))
(home-page "https://bioconductor.org/packages/BiocNeighbors")
(synopsis "Nearest Neighbor Detection for Bioconductor packages")
(description
"This package implements exact and approximate methods for nearest
neighbor detection, in a framework that allows them to be easily switched
within Bioconductor packages or workflows. The exact algorithm is implemented
using pre-clustering with the k-means algorithm. Functions are also provided
to search for all neighbors within a given distance. Parallelization is
achieved for all methods using the BiocParallel framework.")
(license license:gpl3)))