gnu: Add r-circrnaprofiler.

* gnu/packages/bioconductor.scm (r-circrnaprofiler): New variable.
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Mădălin Ionel Patrașcu 2021-03-05 02:20:39 +01:00 committed by Ricardo Wurmus
parent 1353e53605
commit 297531ef58
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@ -6810,6 +6810,59 @@ (define-public r-cicero-monocle3
,@(alist-delete "r-monocle"
(package-propagated-inputs r-cicero)))))))
(define-public r-circrnaprofiler
(package
(name "r-circrnaprofiler")
(version "1.4.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "circRNAprofiler" version))
(sha256
(base32
"1rwpl9a5p5242aiapik0vf4ywqh7m6phzl8z8qmzcy0imbx7mpbn"))))
(properties
`((upstream-name . "circRNAprofiler")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationhub" ,r-annotationhub)
("r-biostrings" ,r-biostrings)
("r-bsgenome" ,r-bsgenome)
("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
("r-deseq2" ,r-deseq2)
("r-dplyr" ,r-dplyr)
("r-edger" ,r-edger)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-ggplot2" ,r-ggplot2)
("r-gwascat" ,r-gwascat)
("r-iranges" ,r-iranges)
("r-magrittr" ,r-magrittr)
("r-r-utils" ,r-r-utils)
("r-readr" ,r-readr)
("r-reshape2" ,r-reshape2)
("r-rlang" ,r-rlang)
("r-rtracklayer" ,r-rtracklayer)
("r-s4vectors" ,r-s4vectors)
("r-seqinr" ,r-seqinr)
("r-stringi" ,r-stringi)
("r-stringr" ,r-stringr)
("r-universalmotif" ,r-universalmotif)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page
"https://github.com/Aufiero/circRNAprofiler")
(synopsis
"Computational framework for the downstream analysis of circular RNA's")
(description
"@code{r-circrnaprofiler} is a computational framework for a comprehensive
in silico analysis of @dfn{circular RNA} (circRNAs). This computational
framework allows to combine and analyze circRNAs previously detected by
multiple publicly available annotation-based circRNA detection tools. It
covers different aspects of circRNAs analysis from differential expression
analysis, evolutionary conservation, biogenesis to functional analysis.")
(license license:gpl3)))
(define-public r-cistopic
(let ((commit "29abd8df9afb60ff27ac3f0a590930debe926950")
(revision "0"))