mirror of
https://git.in.rschanz.org/ryan77627/guix.git
synced 2025-01-11 21:59:08 -05:00
gnu: Add r-circrnaprofiler.
* gnu/packages/bioconductor.scm (r-circrnaprofiler): New variable.
This commit is contained in:
parent
1353e53605
commit
297531ef58
1 changed files with 53 additions and 0 deletions
|
@ -6810,6 +6810,59 @@ (define-public r-cicero-monocle3
|
|||
,@(alist-delete "r-monocle"
|
||||
(package-propagated-inputs r-cicero)))))))
|
||||
|
||||
(define-public r-circrnaprofiler
|
||||
(package
|
||||
(name "r-circrnaprofiler")
|
||||
(version "1.4.0")
|
||||
(source
|
||||
(origin
|
||||
(method url-fetch)
|
||||
(uri (bioconductor-uri "circRNAprofiler" version))
|
||||
(sha256
|
||||
(base32
|
||||
"1rwpl9a5p5242aiapik0vf4ywqh7m6phzl8z8qmzcy0imbx7mpbn"))))
|
||||
(properties
|
||||
`((upstream-name . "circRNAprofiler")))
|
||||
(build-system r-build-system)
|
||||
(propagated-inputs
|
||||
`(("r-annotationhub" ,r-annotationhub)
|
||||
("r-biostrings" ,r-biostrings)
|
||||
("r-bsgenome" ,r-bsgenome)
|
||||
("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
|
||||
("r-deseq2" ,r-deseq2)
|
||||
("r-dplyr" ,r-dplyr)
|
||||
("r-edger" ,r-edger)
|
||||
("r-genomeinfodb" ,r-genomeinfodb)
|
||||
("r-genomicranges" ,r-genomicranges)
|
||||
("r-ggplot2" ,r-ggplot2)
|
||||
("r-gwascat" ,r-gwascat)
|
||||
("r-iranges" ,r-iranges)
|
||||
("r-magrittr" ,r-magrittr)
|
||||
("r-r-utils" ,r-r-utils)
|
||||
("r-readr" ,r-readr)
|
||||
("r-reshape2" ,r-reshape2)
|
||||
("r-rlang" ,r-rlang)
|
||||
("r-rtracklayer" ,r-rtracklayer)
|
||||
("r-s4vectors" ,r-s4vectors)
|
||||
("r-seqinr" ,r-seqinr)
|
||||
("r-stringi" ,r-stringi)
|
||||
("r-stringr" ,r-stringr)
|
||||
("r-universalmotif" ,r-universalmotif)))
|
||||
(native-inputs
|
||||
`(("r-knitr" ,r-knitr)))
|
||||
(home-page
|
||||
"https://github.com/Aufiero/circRNAprofiler")
|
||||
(synopsis
|
||||
"Computational framework for the downstream analysis of circular RNA's")
|
||||
(description
|
||||
"@code{r-circrnaprofiler} is a computational framework for a comprehensive
|
||||
in silico analysis of @dfn{circular RNA} (circRNAs). This computational
|
||||
framework allows to combine and analyze circRNAs previously detected by
|
||||
multiple publicly available annotation-based circRNA detection tools. It
|
||||
covers different aspects of circRNAs analysis from differential expression
|
||||
analysis, evolutionary conservation, biogenesis to functional analysis.")
|
||||
(license license:gpl3)))
|
||||
|
||||
(define-public r-cistopic
|
||||
(let ((commit "29abd8df9afb60ff27ac3f0a590930debe926950")
|
||||
(revision "0"))
|
||||
|
|
Loading…
Reference in a new issue