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gnu: python-rpy2: Update to 3.0.4-1.19868a8.

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* gnu/packages/statistics.scm (python-rpy2): Update to 3.0.4-1.19868a8.
[source]: Fetch from repository.
[propagated-inputs]: Add python-cffi, python-numpy, python-pandas,
python-ipython, and python-tzlocal.
[native-inputs]: Add python-pytest.
[arguments]: Set TZ variable and use pytest to run the tests.
This commit is contained in:
Ricardo Wurmus 2019-07-13 23:48:31 +02:00
parent 06e1ecbf17
commit 29fe71152f
No known key found for this signature in database
GPG key ID: 197A5888235FACAC
1 changed files with 68 additions and 53 deletions
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33
gnu/packages/statistics.scm
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@ -57,6 +57,7 @@ (define-module (gnu packages statistics)
#:use-module (gnu packages icu4c)
#:use-module (gnu packages image)
#:use-module (gnu packages java)
#:use-module (gnu packages libffi)
#:use-module (gnu packages machine-learning)
#:use-module (gnu packages maths)
#:use-module (gnu packages multiprecision)
@ -5765,16 +5766,23 @@ (define-public r-txtplot
(license license:lgpl3+)))
(define-public python-rpy2
;; We need to take this changeset instead of the RELEASE_3_0_4 tag, because
;; it fixes a regression when using ggplot 3.2.0.
(let ((changeset "19868a8")
(revision "1"))
(package
(name "python-rpy2")
(version "2.9.4")
(version (git-version "3.0.4" revision changeset))
(source
(origin
(method url-fetch)
(uri (pypi-uri "rpy2" version))
(method hg-fetch)
(uri (hg-reference
(url "https://bitbucket.org/rpy2/rpy2")
(changeset changeset)))
(file-name (git-file-name name version))
(sha256
(base32
"0bl1d2qhavmlrvalir9hmkjh74w21vzkvc2sg3cbb162s10zfmxy"))))
"1bb0wslcbj3wjvyk3jb9yyzdi6adfqh5vfgcvn22dyzxzbhcs8kk"))))
(build-system python-build-system)
(arguments
'(#:modules ((ice-9 ftw)
@ -5787,17 +5795,23 @@ (define-public python-rpy2
(replace 'check
(lambda* (#:key outputs inputs #:allow-other-keys)
(let ((cwd (getcwd)))
(setenv "TZ" "UTC")
(setenv "PYTHONPATH"
(string-append cwd "/build/"
(find (cut string-prefix? "lib" <>)
(scandir (string-append cwd "/build")))
":"
(getenv "PYTHONPATH"))))
(invoke "python" "-m" "rpy2.tests" "-v"))))))
(invoke "pytest" "-v" "rpy/tests/"))))))
(propagated-inputs
`(("python-six" ,python-six)
`(("python-cffi" ,python-cffi)
("python-six" ,python-six)
("python-jinja2" ,python-jinja2)
("python-pytz" ,python-pytz)))
("python-numpy" ,python-numpy)
("python-pandas" ,python-pandas)
("python-pytz" ,python-pytz)
("python-ipython" ,python-ipython)
("python-tzlocal" ,python-tzlocal)))
(inputs
`(("readline" ,readline)
("icu4c" ,icu4c)
@ -5810,7 +5824,8 @@ (define-public python-rpy2
("r-dbplyr" ,r-dbplyr)
("python-numpy" ,python-numpy)))
(native-inputs
`(("zlib" ,zlib)))
`(("zlib" ,zlib)
("python-pytest" ,python-pytest)))
(home-page "https://rpy2.bitbucket.io/")
(synopsis "Python interface to the R language")
(description "rpy2 is a redesign and rewrite of rpy. It is providing a
@ -5820,7 +5835,7 @@ (define-public python-rpy2
;; Any of these licenses can be picked for the R interface. The whole
;; project is released under GPLv2+ according to the license declaration
;; in "setup.py".
(license (list license:mpl2.0 license:gpl2+ license:lgpl2.1+))))
(license (list license:mpl2.0 license:gpl2+ license:lgpl2.1+)))))
(define-public java-jdistlib
(package