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gnu: bpp-popgen: Update to 2.4.1.

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* gnu/packages/bioinformatics.scm (bpp-popgen): Update to 2.4.1.
[source]: Remove the commit and use the release version. Changed to the github
repo.
[arguments]: Remove the disabled parallel-build.
[home-page]: Changed to new host Université Claude-Bernard Lyon 1.
This commit is contained in:
Mădălin Ionel Patrașcu 2023-04-21 02:03:57 +02:00 committed by Ricardo Wurmus
parent 2babf3d7d7
commit 2a20acf24b
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GPG key ID: 197A5888235FACAC
1 changed files with 22 additions and 27 deletions
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gnu/packages/bioinformatics.scm
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@ -2296,35 +2296,30 @@ (define-public bpp-phyl-omics
(license license:cecill))) (license license:cecill)))
(define-public bpp-popgen (define-public bpp-popgen
;; The last release was in 2014 and the recommended way to install from source (package
;; is to clone the git repository, so we do this. (name "bpp-popgen")
;; http://biopp.univ-montp2.fr/wiki/index.php/Main_Page (version "2.4.1")
(let ((commit "e472bac9b1a148803895d747cd6d0c5904f85d9f")) (source (origin
(package (method git-fetch)
(name "bpp-popgen") (uri (git-reference
(version (string-append "2.2.0-1." (string-take commit 7))) (url "https://github.com/BioPP/bpp-popgen")
(source (origin (commit (string-append "v" version))))
(method git-fetch) (file-name (git-file-name name version))
(uri (git-reference (sha256
(url "http://biopp.univ-montp2.fr/git/bpp-popgen") (base32
(commit commit))) "0bz0fhrq3dri6a0hvfc3zlvrns8mrzzlnicw5pyfa812gc1qwfvh"))))
(file-name (string-append name "-" version "-checkout")) (build-system cmake-build-system)
(sha256 (arguments
(base32 (list #:tests? #f)) ; There are no tests.
"0yn82dzn1n5629nzja68xfrhi655709rjanyryb36vzkmymy6dw5")))) (inputs
(build-system cmake-build-system) (list bpp-core bpp-seq))
(arguments (home-page "https://pbil.univ-lyon1.fr/bpp-doc/bpp-popgen/html/")
`(#:parallel-build? #f (synopsis "Bio++ population genetics library")
#:tests? #f)) ; There are no tests. (description
(inputs "Bio++ is a set of C++ libraries for Bioinformatics, including sequence
(list bpp-core bpp-seq))
(home-page "http://biopp.univ-montp2.fr")
(synopsis "Bio++ population genetics library")
(description
"Bio++ is a set of C++ libraries for Bioinformatics, including sequence
analysis, phylogenetics, molecular evolution and population genetics. This analysis, phylogenetics, molecular evolution and population genetics. This
library provides population genetics-related modules.") library provides population genetics-related modules.")
(license license:cecill-c)))) (license license:cecill-c)))
(define-public bpp-seq (define-public bpp-seq
(package (package