gnu: hdf-java: Adjust indentation.

* gnu/packages/maths.scm (hdf-java): Adjust indentation.
This commit is contained in:
Ricardo Wurmus 2019-03-27 10:47:34 +01:00
parent 64dc8b0bfd
commit 2a509880d4
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@ -886,130 +886,130 @@ (define-public hdf5-1.10
(define-public hdf-java
(package
(name "hdf-java")
(version "3.3.2")
(source
(origin
(method url-fetch)
(uri (string-append
"http://www.hdfgroup.org/ftp/HDF5/releases/HDF-JAVA/hdfjni-"
version "/src/CMake-hdfjava-" version ".tar.gz"))
(sha256
(base32 "0m1gp2aspcblqzmpqbdpfp6giskws85ds6p5gz8sx7asyp7wznpr"))
(modules '((guix build utils)))
(snippet ; Make sure we don't use the bundled sources and binaries.
`(begin
(for-each delete-file
(list "SZip.tar.gz" "ZLib.tar.gz" "JPEG8d.tar.gz"
"HDF4.tar.gz" "HDF5.tar.gz"))
(delete-file-recursively ,(string-append "hdfjava-" version "/lib"))
#t))))
(build-system gnu-build-system)
(native-inputs
`(("jdk" ,icedtea "jdk")
("automake" ,automake) ; For up to date 'config.guess' and 'config.sub'.
;; For tests:
("hamcrest-core" ,java-hamcrest-core)
("junit" ,java-junit)
("slf4j-simple" ,java-slf4j-simple)))
(inputs
`(("hdf4" ,hdf4)
("hdf5" ,hdf5)
("zlib" ,zlib)
("libjpeg" ,libjpeg)
("slf4j-api" ,java-slf4j-api)))
(arguments
`(#:configure-flags
(list (string-append "--target=" ,(or (%current-target-system) (%current-system)))
(string-append "--with-jdk=" (assoc-ref %build-inputs "jdk") "/include,"
(assoc-ref %build-inputs "jdk") "/lib" )
(string-append "--with-hdf4=" (assoc-ref %build-inputs "hdf4") "/lib")
(string-append "--with-hdf5=" (assoc-ref %build-inputs "hdf5") "/lib"))
(name "hdf-java")
(version "3.3.2")
(source
(origin
(method url-fetch)
(uri (string-append
"http://www.hdfgroup.org/ftp/HDF5/releases/HDF-JAVA/hdfjni-"
version "/src/CMake-hdfjava-" version ".tar.gz"))
(sha256
(base32 "0m1gp2aspcblqzmpqbdpfp6giskws85ds6p5gz8sx7asyp7wznpr"))
(modules '((guix build utils)))
(snippet ; Make sure we don't use the bundled sources and binaries.
`(begin
(for-each delete-file
(list "SZip.tar.gz" "ZLib.tar.gz" "JPEG8d.tar.gz"
"HDF4.tar.gz" "HDF5.tar.gz"))
(delete-file-recursively ,(string-append "hdfjava-" version "/lib"))
#t))))
(build-system gnu-build-system)
(native-inputs
`(("jdk" ,icedtea "jdk")
("automake" ,automake) ; For up to date 'config.guess' and 'config.sub'.
;; For tests:
("hamcrest-core" ,java-hamcrest-core)
("junit" ,java-junit)
("slf4j-simple" ,java-slf4j-simple)))
(inputs
`(("hdf4" ,hdf4)
("hdf5" ,hdf5)
("zlib" ,zlib)
("libjpeg" ,libjpeg)
("slf4j-api" ,java-slf4j-api)))
(arguments
`(#:configure-flags
(list (string-append "--target=" ,(or (%current-target-system) (%current-system)))
(string-append "--with-jdk=" (assoc-ref %build-inputs "jdk") "/include,"
(assoc-ref %build-inputs "jdk") "/lib" )
(string-append "--with-hdf4=" (assoc-ref %build-inputs "hdf4") "/lib")
(string-append "--with-hdf5=" (assoc-ref %build-inputs "hdf5") "/lib"))
#:make-flags
(list (string-append "HDFLIB=" (assoc-ref %build-inputs "hdf4") "/lib")
(string-append "HDF5LIB=" (assoc-ref %build-inputs "hdf5") "/lib")
(string-append "ZLIB=" (assoc-ref %build-inputs "zlib") "/lib/libz.so")
(string-append "JPEGLIB="
(assoc-ref %build-inputs "libjpeg") "/lib/libjpeg.so")
"LLEXT=so")
#:make-flags
(list (string-append "HDFLIB=" (assoc-ref %build-inputs "hdf4") "/lib")
(string-append "HDF5LIB=" (assoc-ref %build-inputs "hdf5") "/lib")
(string-append "ZLIB=" (assoc-ref %build-inputs "zlib") "/lib/libz.so")
(string-append "JPEGLIB="
(assoc-ref %build-inputs "libjpeg") "/lib/libjpeg.so")
"LLEXT=so")
#:phases
(modify-phases %standard-phases
(add-before 'configure 'chdir-to-source
(lambda _ (chdir ,(string-append "hdfjava-" version)) #t))
(add-before 'configure 'patch-build
(lambda* (#:key inputs outputs #:allow-other-keys)
(substitute* "configure"
(("COPT=\"") "COPT=\"-O2 ") ; CFLAGS is ignored in Makefiles
(("/bin/cat") (which "cat")))
;; Set classpath for compilation
(substitute* '("hdf/hdf5lib/Makefile.in"
"hdf/hdf5lib/exceptions/Makefile.in"
"hdf/hdflib/Makefile.in")
(("\\$\\(TOP\\)/lib/slf4j-api-1\\.7\\.5\\.jar")
(string-append (assoc-ref inputs "slf4j-api")
"/share/java/slf4j-api.jar")))
;; Replace outdated config.sub and config.guess:
(with-directory-excursion "config"
(for-each (lambda (file)
(install-file
(string-append (assoc-ref inputs "automake")
"/share/automake-"
,(version-major+minor (package-version automake))
"/" file) "."))
'("config.sub" "config.guess")))
#:phases
(modify-phases %standard-phases
(add-before 'configure 'chdir-to-source
(lambda _ (chdir ,(string-append "hdfjava-" version)) #t))
(add-before 'configure 'patch-build
(lambda* (#:key inputs outputs #:allow-other-keys)
(substitute* "configure"
(("COPT=\"") "COPT=\"-O2 ") ; CFLAGS is ignored in Makefiles
(("/bin/cat") (which "cat")))
;; Set classpath for compilation
(substitute* '("hdf/hdf5lib/Makefile.in"
"hdf/hdf5lib/exceptions/Makefile.in"
"hdf/hdflib/Makefile.in")
(("\\$\\(TOP\\)/lib/slf4j-api-1\\.7\\.5\\.jar")
(string-append (assoc-ref inputs "slf4j-api")
"/share/java/slf4j-api.jar")))
;; Replace outdated config.sub and config.guess:
(with-directory-excursion "config"
(for-each (lambda (file)
(install-file
(string-append (assoc-ref inputs "automake")
"/share/automake-"
,(version-major+minor (package-version automake))
"/" file) "."))
'("config.sub" "config.guess")))
;; Fix embedded version number
(let ((hdf5version (list ,@(string-split (package-version hdf5) #\.))))
(substitute* "hdf/hdf5lib/H5.java"
(("1, 8, 19")
(string-join hdf5version ", "))))
;; Fix embedded version number
(let ((hdf5version (list ,@(string-split (package-version hdf5) #\.))))
(substitute* "hdf/hdf5lib/H5.java"
(("1, 8, 19")
(string-join hdf5version ", "))))
(mkdir-p (string-append (assoc-ref outputs "out")))
;; Set classpath for tests
(let* ((build-dir (getcwd))
(lib (string-append build-dir "/lib"))
(jhdf (string-append lib "/jhdf.jar"))
(jhdf5 (string-append lib "/jhdf5.jar"))
(testjars
(map (lambda (i)
(string-append (assoc-ref inputs i)
"/share/java/" i ".jar"))
'("junit" "hamcrest-core" "slf4j-api" "slf4j-simple")))
(class-path
(string-join `("." ,build-dir ,jhdf ,jhdf5 ,@testjars) ":")))
(mkdir-p (string-append (assoc-ref outputs "out")))
;; Set classpath for tests
(let* ((build-dir (getcwd))
(lib (string-append build-dir "/lib"))
(jhdf (string-append lib "/jhdf.jar"))
(jhdf5 (string-append lib "/jhdf5.jar"))
(testjars
(map (lambda (i)
(string-append (assoc-ref inputs i)
"/share/java/" i ".jar"))
'("junit" "hamcrest-core" "slf4j-api" "slf4j-simple")))
(class-path
(string-join `("." ,build-dir ,jhdf ,jhdf5 ,@testjars) ":")))
(substitute* '("test/hdf5lib/Makefile.in"
"test/hdf5lib/junit.sh.in"
"examples/runExample.sh.in")
(("/usr/bin/test")
(string-append (assoc-ref inputs "coreutils")
"/bin/test"))
(("/usr/bin/uname")
(string-append (assoc-ref inputs "coreutils")
"/bin/uname"))
(("CLASSPATH=[^\n]*")
(string-append "CLASSPATH=" class-path)))
(setenv "CLASSPATH" class-path))
#t))
(add-before 'check 'build-examples
(lambda _
(apply invoke `("javac"
,@(find-files "examples" ".*\\.java"))))))
(substitute* '("test/hdf5lib/Makefile.in"
"test/hdf5lib/junit.sh.in"
"examples/runExample.sh.in")
(("/usr/bin/test")
(string-append (assoc-ref inputs "coreutils")
"/bin/test"))
(("/usr/bin/uname")
(string-append (assoc-ref inputs "coreutils")
"/bin/uname"))
(("CLASSPATH=[^\n]*")
(string-append "CLASSPATH=" class-path)))
(setenv "CLASSPATH" class-path))
#t))
(add-before 'check 'build-examples
(lambda _
(apply invoke `("javac"
,@(find-files "examples" ".*\\.java"))))))
#:parallel-build? #f
#:parallel-build? #f
#:parallel-tests? #f ))
(home-page "https://support.hdfgroup.org/products/java")
(synopsis "Java interface for the HDF4 and HDF5 libraries")
(description "Java HDF Interface (JHI) and Java HDF5 Interface (JHI5) use
#:parallel-tests? #f ))
(home-page "https://support.hdfgroup.org/products/java")
(synopsis "Java interface for the HDF4 and HDF5 libraries")
(description "Java HDF Interface (JHI) and Java HDF5 Interface (JHI5) use
the Java Native Interface to wrap the HDF4 and HDF5 libraries, which are
implemented in C.")
;; BSD-style license:
(license (license:x11-style
"https://support.hdfgroup.org/ftp/HDF5/hdf-java\
;; BSD-style license:
(license (license:x11-style
"https://support.hdfgroup.org/ftp/HDF5/hdf-java\
/current/src/unpacked/COPYING"))))
(define-public hdf-eos2