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gnu: Add r-demultiplex2.

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* gnu/packages/bioinformatics.scm (r-demultiplex2): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
This commit is contained in:
Navid Afkhami 2023-04-16 12:28:12 +02:00 committed by Ricardo Wurmus
parent 83fb491e44
commit 2b2068a083
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1 changed files with 41 additions and 0 deletions
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gnu/packages/bioinformatics.scm
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@ -9667,6 +9667,47 @@ (define-public r-demultiplex
")
(license license:cc0))))
(define-public r-demultiplex2
(let ((commit "e42bc8310c0ea035af100e6ccea59b46ad6385f5")
(revision "1"))
(package
(name "r-demultiplex2")
(version (git-version "1.0.0" revision commit))
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/Gartner-Lab/deMULTIplex2")
(commit commit)))
(file-name (git-file-name name version))
(sha256
(base32
"15f3kshsdvm97w24ql9b1wjlfbabimdsam0482hg7jivlvpl8j9w"))))
(properties `((upstream-name . "deMULTIplex2")))
(build-system r-build-system)
(propagated-inputs (list r-data-table
r-devtools
r-dplyr
r-ggextra
r-ggplot2
r-gridextra
r-magrittr
r-mass
r-matrix
r-rcolorbrewer
r-shortread
r-stringdist
r-tidyr
r-uwot
r-viridis
r-xvector))
(home-page "https://github.com/Gartner-Lab/deMULTIplex2")
(synopsis "Robust sample demultiplexing for scRNA-seq")
(description
"This package implements a bioinformatics algorithm for demultiplexing
multiplexed single cell datasets. It is built on a statistical model of tag
read counts derived from the physical mechanism of tag cross-contamination.")
(license license:cc0))))
(define-public gdc-client
(package
(name "gdc-client")