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gnu: Add r-demultiplex2.
* gnu/packages/bioinformatics.scm (r-demultiplex2): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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@ -9667,6 +9667,47 @@ (define-public r-demultiplex
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")
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")
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(license license:cc0))))
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(license license:cc0))))
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(define-public r-demultiplex2
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(let ((commit "e42bc8310c0ea035af100e6ccea59b46ad6385f5")
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(revision "1"))
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(package
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(name "r-demultiplex2")
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(version (git-version "1.0.0" revision commit))
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/Gartner-Lab/deMULTIplex2")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"15f3kshsdvm97w24ql9b1wjlfbabimdsam0482hg7jivlvpl8j9w"))))
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(properties `((upstream-name . "deMULTIplex2")))
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(build-system r-build-system)
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(propagated-inputs (list r-data-table
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r-devtools
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r-dplyr
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r-ggextra
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r-ggplot2
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r-gridextra
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r-magrittr
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r-mass
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r-matrix
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r-rcolorbrewer
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r-shortread
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r-stringdist
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r-tidyr
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r-uwot
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r-viridis
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r-xvector))
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(home-page "https://github.com/Gartner-Lab/deMULTIplex2")
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(synopsis "Robust sample demultiplexing for scRNA-seq")
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(description
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"This package implements a bioinformatics algorithm for demultiplexing
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multiplexed single cell datasets. It is built on a statistical model of tag
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read counts derived from the physical mechanism of tag cross-contamination.")
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(license license:cc0))))
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(define-public gdc-client
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(define-public gdc-client
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(package
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(package
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(name "gdc-client")
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(name "gdc-client")
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