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gnu: Add r-seqgl.

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* gnu/packages/bioinformatics.scm (r-seqgl): New variable.
This commit is contained in:
Ricardo Wurmus 2016-11-24 15:24:25 +01:00
parent c827f20286
commit 2d9fb1702f
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gnu/packages/bioinformatics.scm
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@ -7613,6 +7613,36 @@ (define-public r-chipkernels
Sequences.")
(license license:gpl2+))))
(define-public r-seqgl
(package
(name "r-seqgl")
(version "1.1.4")
(source
(origin
(method url-fetch)
(uri (string-append "https://github.com/ManuSetty/SeqGL/"
"archive/" version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
"0pnk1p3sci5yipyc8xnb6jbmydpl80fld927xgnbcv104hy8h8yh"))))
(build-system r-build-system)
(propagated-inputs
`(("r-biostrings" ,r-biostrings)
("r-chipkernels" ,r-chipkernels)
("r-genomicranges" ,r-genomicranges)
("r-spams" ,r-spams)
("r-wgcna" ,r-wgcna)
("r-fastcluster" ,r-fastcluster)))
(home-page "https://github.com/ManuSetty/SeqGL")
(synopsis "Group lasso for Dnase/ChIP-seq data")
(description "SeqGL is a group lasso based algorithm to extract
transcription factor sequence signals from ChIP, DNase and ATAC-seq profiles.
This package presents a method which uses group lasso to discriminate between
bound and non bound genomic regions to accurately identify transcription
factors bound at the specific regions.")
(license license:gpl2+)))
(define-public emboss
(package
(name "emboss")