ryan77627/guix
1
0
Fork 0
mirror of https://git.in.rschanz.org/ryan77627/guix.git synced 2024-12-25 05:48:07 -05:00
Code Issues Projects Releases Packages Wiki Activity Actions

gnu: Add GenomicFeatures.

Browse source 
* gnu/packages/bioinformatics.scm (r-genomicfeatures): New variable.
This commit is contained in:
Ricardo Wurmus 2015-12-18 14:09:18 +01:00
parent 317755ff0f
commit 2fd7c04984
1 changed files with 41 additions and 0 deletions
Show stats Download patch file Download diff file Expand all files Collapse all files

41
gnu/packages/bioinformatics.scm
View file

@ -3746,6 +3746,47 @@ (define-public r-rtracklayer
as well as query and modify the browser state, such as the current viewport.")
(license license:artistic2.0)))
(define-public r-genomicfeatures
(package
(name "r-genomicfeatures")
(version "1.22.7")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "GenomicFeatures" version))
(sha256
(base32
"1jb4s49ar5j9qslpd3kfdg2wrl4q7ciysd55h9a7zvspymxcngq8"))))
(properties
`((upstream-name . "GenomicFeatures")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
("r-biomart" ,r-biomart)
("r-biostrings" ,r-biostrings)
("r-dbi" ,r-dbi)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
("r-rcurl" ,r-rcurl)
("r-rsqlite" ,r-rsqlite)
("r-rtracklayer" ,r-rtracklayer)
("r-s4vectors" ,r-s4vectors)
("r-xvector" ,r-xvector)))
(home-page "http://bioconductor.org/packages/GenomicFeatures")
(synopsis "Tools for working with transcript centric annotations")
(description
"This package provides a set of tools and methods for making and
manipulating transcript centric annotations. With these tools the user can
easily download the genomic locations of the transcripts, exons and cds of a
given organism, from either the UCSC Genome Browser or a BioMart
database (more sources will be supported in the future). This information is
then stored in a local database that keeps track of the relationship between
transcripts, exons, cds and genes. Flexible methods are provided for
extracting the desired features in a convenient format.")
(license license:artistic2.0)))
(define-public r-qtl
(package
(name "r-qtl")