gnu: Add Diversitree.

* gnu/packages/bioinformatics.scm (r-diversitree): New variable.
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Leo Famulari 2018-02-17 17:06:26 -05:00
parent 799ad71bfc
commit 32cbbac11a
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@ -9,6 +9,7 @@
;;; Copyright © 2016, 2018 Raoul Bonnal <ilpuccio.febo@gmail.com>
;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2017 Arun Isaac <arunisaac@systemreboot.net>
;;; Copyright © 2018 Joshua Sierles, Nextjournal <joshua@nextjournal.com>
;;;
;;; This file is part of GNU Guix.
;;;
@ -12855,3 +12856,34 @@ (define-public pigx-bsseq
and coverage and can be used to produce information on differential
methylation and segmentation.")
(license license:gpl3+)))
(define-public r-diversitree
(package
(name "r-diversitree")
(version "0.9-10")
(source
(origin
(method url-fetch)
(uri (cran-uri "diversitree" version))
(sha256
(base32
"0gh4rcrp0an3jh8915i1fsxlgyfk7njywgbd5ln5r2jhr085kpz7"))))
(build-system r-build-system)
(native-inputs
`(("gfortran" ,gfortran)))
(inputs `(("fftw" ,fftw) ("gsl" ,gsl)))
(propagated-inputs
`(("r-ape" ,r-ape)
("r-desolve" ,r-desolve)
("r-rcpp" ,r-rcpp)
("r-suplex" ,r-subplex)))
(home-page "https://www.zoology.ubc.ca/prog/diversitree")
(synopsis "Comparative 'phylogenetic' analyses of diversification")
(description "This package contains a number of comparative \"phylogenetic\"
methods, mostly focusing on analysing diversification and character evolution.
Contains implementations of \"BiSSE\" (Binary State Speciation and Extinction)
and its unresolved tree extensions, \"MuSSE\" (Multiple State Speciation and
Extinction), \"QuaSSE\", \"GeoSSE\", and \"BiSSE-ness\" Other included methods
include Markov models of discrete and continuous trait evolution and constant
rate speciation and extinction.")
(license license:gpl2+)))