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gnu: Add python-arboreto.

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* gnu/packages/bioinformatics.scm (python-arboreto): New variable.
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Ricardo Wurmus 2022-06-16 15:18:17 +02:00
parent fbe5707b73
commit 3535d8dc5a
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gnu/packages/bioinformatics.scm
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@ -13424,6 +13424,39 @@ (define-public python-ctxcore
pycisTarget and SCENIC.")
(license license:gpl3+)))
(define-public python-arboreto
(package
(name "python-arboreto")
(version "0.1.6")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/aertslab/arboreto")
(commit "2f475dca08f47a60acc2beb8dd897e77b7495ca4")))
(file-name (git-file-name name version))
(sha256
(base32
"0l0im8ay7l2d24f7vaha454vsaha9s36bfqhbijg3b8ir8apsd7l"))))
(build-system python-build-system)
;; Lots of tests fail because python-distributed fails to start the
;; "Nanny" process.
(arguments '(#:tests? #false))
(propagated-inputs
(list python-bokeh
python-dask
python-distributed
python-numpy
python-pandas
python-scikit-learn
python-scipy
python-tornado-6))
(home-page "https://github.com/aertslab/arboreto")
(synopsis "Gene regulatory network inference using tree-based ensemble regressors")
(description
"This package implements scalable gene regulatory network inference using
tree-based ensemble regressors.")
(license license:bsd-3)))
(define-public vbz-compression
(package
(name "vbz-compression")