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gnu: libdivsufsort: Move to datastructures.scm.

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* gnu/packages/bioinformatics.scm (libdivsufsort): Move to ...
* gnu/packages/datastructures.scm: ... here.
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Efraim Flashner 2019-11-25 10:55:01 +02:00
parent 31872b3e75
commit 3546771cc8
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2 changed files with 30 additions and 30 deletions
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29
gnu/packages/bioinformatics.scm
View file

@ -11572,35 +11572,6 @@ (define-public libgff
dependency like SeqAn.")
(license (license:x11-style "https://www.boost.org/LICENSE_1_0.txt"))))
(define-public libdivsufsort
(package
(name "libdivsufsort")
(version "2.0.1")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/y-256/libdivsufsort.git")
(commit version)))
(file-name (git-file-name name version))
(sha256
(base32
"0fgdz9fzihlvjjrxy01md1bv9vh12rkgkwbm90b1hj5xpbaqp7z2"))))
(build-system cmake-build-system)
(arguments
'(#:tests? #f ; there are no tests
#:configure-flags
;; Needed for rapmap and sailfish.
'("-DBUILD_DIVSUFSORT64=ON")))
(home-page "https://github.com/y-256/libdivsufsort")
(synopsis "Lightweight suffix-sorting library")
(description "libdivsufsort is a software library that implements a
lightweight suffix array construction algorithm. This library provides a
simple and an efficient C API to construct a suffix array and a
Burrows-Wheeler transformed string from a given string over a constant-size
alphabet. The algorithm runs in O(n log n) worst-case time using only 5n+O(1)
bytes of memory space, where n is the length of the string.")
(license license:expat)))
(define-public sailfish
(package
(name "sailfish")

31
gnu/packages/datastructures.scm
View file

@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
;;; Copyright © 2015, 2016, 2019 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2015, 2016, 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
;;; Copyright © 2016, 2017, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
;;; Copyright © 2018 Meiyo Peng <meiyo.peng@gmail.com>
;;; Copyright © 2019 Efraim Flashner <efraim@flashner.co.il>
@ -229,3 +229,32 @@ (define-public sdsl-lite
complexity of an operation performed on the classical data structure and the
equivalent succinct data structure are (most of the time) identical.")
(license license:gpl3+)))
(define-public libdivsufsort
(package
(name "libdivsufsort")
(version "2.0.1")
(source (origin
(method git-fetch)
(uri (git-reference
(url "https://github.com/y-256/libdivsufsort.git")
(commit version)))
(file-name (git-file-name name version))
(sha256
(base32
"0fgdz9fzihlvjjrxy01md1bv9vh12rkgkwbm90b1hj5xpbaqp7z2"))))
(build-system cmake-build-system)
(arguments
'(#:tests? #f ; there are no tests
#:configure-flags
;; Needed for rapmap and sailfish.
'("-DBUILD_DIVSUFSORT64=ON")))
(home-page "https://github.com/y-256/libdivsufsort")
(synopsis "Lightweight suffix-sorting library")
(description "libdivsufsort is a software library that implements a
lightweight suffix array construction algorithm. This library provides a
simple and an efficient C API to construct a suffix array and a
Burrows-Wheeler transformed string from a given string over a constant-size
alphabet. The algorithm runs in O(n log n) worst-case time using only 5n+O(1)
bytes of memory space, where n is the length of the string.")
(license license:expat)))