Merge branch 'master' into core-updates

gnu/local.mk

@@ -515,6 +515,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/gcc-cross-environment-variables.patch	\
   %D%/packages/patches/gcc-libvtv-runpath.patch			\
   %D%/packages/patches/gcc-5.0-libvtv-runpath.patch		\
+  %D%/packages/patches/gd-fix-gd2-read-test.patch		\
   %D%/packages/patches/gd-fix-tests-on-i686.patch		\
   %D%/packages/patches/gegl-CVE-2012-4433.patch			\
   %D%/packages/patches/geoclue-config.patch			\

gnu/packages/databases.scm

@@ -772,15 +772,15 @@ (define-public perl-dbd-pg
 (define-public perl-dbd-mysql
   (package
     (name "perl-dbd-mysql")
-    (version "4.033")
+    (version "4.035")
     (source
      (origin
        (method url-fetch)
-       (uri (string-append "mirror://cpan/authors/id/C/CA/CAPTTOFU/"
+       (uri (string-append "mirror://cpan/authors/id/M/MI/MICHIELB/"
                            "DBD-mysql-" version ".tar.gz"))
        (sha256
         (base32
-         "0769xakykps0cx368g4vaips4w3bjk383rianiavq7sq6g6bp66c"))))
+         "0dqrnrk8yjl06xl8hld5wyalk77z0h9j5h1gdk4z9g0nx9js7v5p"))))
     (build-system perl-build-system)
     ;; Tests require running MySQL server
     (arguments `(#:tests? #f))

gnu/packages/gd.scm

@@ -50,7 +50,8 @@ (define-public gd
              (sha256
               (base32
                "0g3xz8jpz1pl2zzmssglrpa9nxiaa7rmcmvgpbrjz8k9cyynqsvl"))
-             (patches (search-patches "gd-fix-tests-on-i686.patch"))))
+             (patches (search-patches "gd-fix-gd2-read-test.patch"
+                                      "gd-fix-tests-on-i686.patch"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("pkg-config" ,pkg-config)))

gnu/packages/networking.scm

@@ -331,7 +331,7 @@ (define-public iodine
 (define-public wireshark
   (package
     (name "wireshark")
-    (version "2.0.4")
+    (version "2.0.5")
     (synopsis "Network traffic analyzer")
     (source
      (origin
@@ -340,7 +340,7 @@ (define-public wireshark
                            version ".tar.bz2"))
        (sha256
         (base32
-         "19g11m8m8qd7dkcvcb27lyppklg608d9ap7wr3mr88clm4nwiacy"))))
+         "02xi3fz8blcz9cf75rs11g7bijk06wm45vpgnksp72c2609j9q0c"))))
     (build-system glib-or-gtk-build-system)
     (inputs `(("bison" ,bison)
               ("c-ares" ,c-ares)

gnu/packages/patches/gd-fix-gd2-read-test.patch

@@ -0,0 +1,14 @@
+Fix a 'maybe-uninitialized' warning (turned error)
+which occurs on non-Intel platforms.
+
+--- libgd-2.2.3/tests/gd2/gd2_read.c	2016-07-21 01:21:16.000000000 -0400
++++ libgd-2.2.3/tests/gd2/gd2_read.c	2016-07-29 15:52:03.806405312 -0400
+@@ -5,7 +5,7 @@
+ 
+ int main(int argc, char *argv[])
+ {
+-	int error, i = 0;
++	int error = 0, i = 0;
+ 	gdImagePtr im, exp;
+ 	FILE *fp;
+ 	char *path[] = {

gnu/packages/protobuf.scm

@@ -32,14 +32,15 @@ (define-module (gnu packages protobuf)
 (define-public protobuf
   (package
     (name "protobuf")
-    (version "2.5.0")
+    (version "2.6.1")
     (source (origin
               (method url-fetch)
-              (uri (string-append "http://protobuf.googlecode.com/files/protobuf-"
+              (uri (string-append "https://github.com/google/protobuf/releases/"
+                                  "download/v" version "/protobuf-"
                                   version ".tar.bz2"))
               (sha256
                (base32
-                "0xxn9gxhvsgzz2sgmihzf6pf75clr05mqj6218camwrwajpcbgqk"))))
+                "040rcs9fpv4bslhiy43v7dcrzakz4vwwpyqg4jp8bn24sl95ci7f"))))
     (build-system gnu-build-system)
     (inputs `(("zlib" ,zlib)))
     (home-page "http://code.google.com/p/protobuf/")

guix/scripts/size.scm

@@ -29,6 +29,7 @@ (define-module (guix scripts size)
   #:use-module (srfi srfi-1)
   #:use-module (srfi srfi-9)
   #:use-module (srfi srfi-11)
+  #:use-module (srfi srfi-26)
   #:use-module (srfi srfi-34)
   #:use-module (srfi srfi-37)
   #:use-module (ice-9 match)
@@ -119,10 +120,12 @@ (define (requisites* items)
 information available in the local store or using information about
 substitutes."
   (lambda (store)
-    (guard (c ((nix-protocol-error? c)
-               (values (substitutable-requisites store items)
-                       store)))
-      (values (requisites store items) store))))
+    (let-values (((local missing)
+                  (partition (cut valid-path? store <>) items)))
+      (values (delete-duplicates
+               (append (requisites store local)
+                       (substitutable-requisites store missing)))
+              store))))
 
 (define (store-profile items)
   "Return as a monadic value a list of <profile> objects representing the