gnu: Add Infernal.

* gnu/packages/bioinformatics.scm (infernal): New variable.
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Ricardo Wurmus 2016-09-02 15:35:14 +02:00 committed by Ricardo Wurmus
parent d058708e86
commit 35aa90a1fd
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@ -4835,6 +4835,32 @@ (define-public vcftools
;; at https://vcftools.github.io/license.html
(license license:lgpl3)))
(define-public infernal
(package
(name "infernal")
(version "1.1.2")
(source (origin
(method url-fetch)
(uri (string-append "http://eddylab.org/software/infernal/"
"infernal-" version ".tar.gz"))
(sha256
(base32
"0sr2hiz3qxfwqpz3whxr6n82p3x27336v3f34iqznp10hks2935c"))))
(build-system gnu-build-system)
(native-inputs
`(("perl" ,perl))) ; for tests
(home-page "http://eddylab.org/infernal/")
(synopsis "Inference of RNA alignments")
(description "Infernal (\"INFERence of RNA ALignment\") is a tool for
searching DNA sequence databases for RNA structure and sequence similarities.
It is an implementation of a special case of profile stochastic context-free
grammars called @dfn{covariance models} (CMs). A CM is like a sequence
profile, but it scores a combination of sequence consensus and RNA secondary
structure consensus, so in many cases, it is more capable of identifying RNA
homologs that conserve their secondary structure more than their primary
sequence.")
(license license:bsd-3)))
(define-public r-vegan
(package
(name "r-vegan")