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gnu: Add r-arrayqualitymetrics.
* gnu/packages/bioconductor.scm (r-arrayqualitymetrics): New variable.
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@ -3420,6 +3420,44 @@ (define-public r-arrayexpress
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structures: @code{ExpressionSet}, @code{AffyBatch}, @code{NChannelSet}.")
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(license license:artistic2.0)))
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(define-public r-arrayqualitymetrics
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(package
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(name "r-arrayqualitymetrics")
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(version "3.56.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "arrayQualityMetrics" version))
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(sha256
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(base32
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"06plgmgla7hvryqfcid4y35s24r50s39d9f8sjchwbxqciwy72wj"))))
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(properties `((upstream-name . "arrayQualityMetrics")))
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(build-system r-build-system)
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(propagated-inputs (list r-affy
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r-affyplm
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r-beadarray
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r-biobase
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r-genefilter
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r-gridsvg
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r-hmisc
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r-hwriter
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r-lattice
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r-latticeextra
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r-limma
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r-rcolorbrewer
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r-setrng
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r-svglite
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r-vsn
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r-xml))
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(native-inputs (list r-knitr))
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(home-page "https://bioconductor.org/packages/arrayQualityMetrics")
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(synopsis "Quality metrics report for microarray data sets")
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(description
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"This package generates microarray quality metrics reports for data in
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Bioconductor microarray data containers @code{(ExpressionSet},
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@code{NChannelSet}, @code{AffyBatch}). One and two color array platforms are
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supported.")
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(license license:lgpl2.0+)))
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(define-public r-asafe
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(package
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(name "r-asafe")
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