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gnu: r-org-ce-eg-db: Move to (gnu packages bioconductor).

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* gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-ce-eg-db): ...to here.
This commit is contained in:
Ricardo Wurmus 2019-03-06 21:35:20 +01:00
parent 7bc5d1b0e1
commit 3a08940e1a
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2 changed files with 26 additions and 26 deletions
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26
gnu/packages/bioconductor.scm
View file

@ -360,6 +360,32 @@ (define-public r-bsgenome-mmusculus-ucsc-mm10
in Biostrings objects.")
(license license:artistic2.0)))
(define-public r-org-ce-eg-db
(package
(name "r-org-ce-eg-db")
(version "3.7.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"org.Ce.eg.db_" version ".tar.gz"))
(sha256
(base32
"1w5br1ss4ha8wv4v2saj7cmbjc2jw0dyj2f2y269l078z31wcnaz"))))
(properties
`((upstream-name . "org.Ce.eg.db")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)))
(home-page "https://www.bioconductor.org/packages/org.Ce.eg.db/")
(synopsis "Genome wide annotation for Worm")
(description
"This package provides mappings from Entrez gene identifiers to various
annotations for the genome of the model worm Caenorhabditis elegans.")
(license license:artistic2.0)))
(define-public r-org-dr-eg-db
(package
(name "r-org-dr-eg-db")

26
gnu/packages/bioinformatics.scm
View file

@ -8006,32 +8006,6 @@ (define-public r-org-hs-eg-db
on mapping using Entrez Gene identifiers.")
(license license:artistic2.0)))
(define-public r-org-ce-eg-db
(package
(name "r-org-ce-eg-db")
(version "3.7.0")
(source (origin
(method url-fetch)
;; We cannot use bioconductor-uri here because this tarball is
;; located under "data/annotation/" instead of "bioc/".
(uri (string-append "https://www.bioconductor.org/packages/"
"release/data/annotation/src/contrib/"
"org.Ce.eg.db_" version ".tar.gz"))
(sha256
(base32
"1w5br1ss4ha8wv4v2saj7cmbjc2jw0dyj2f2y269l078z31wcnaz"))))
(properties
`((upstream-name . "org.Ce.eg.db")))
(build-system r-build-system)
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)))
(home-page "https://www.bioconductor.org/packages/org.Ce.eg.db/")
(synopsis "Genome wide annotation for Worm")
(description
"This package provides mappings from Entrez gene identifiers to various
annotations for the genome of the model worm Caenorhabditis elegans.")
(license license:artistic2.0)))
(define-public r-org-dm-eg-db
(package
(name "r-org-dm-eg-db")