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gnu: Add r-htscluster.

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* gnu/packages/bioconductor.scm (r-htscluster): New variable.
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Ricardo Wurmus 2019-03-04 15:00:18 +01:00
parent 4254b480c9
commit 3a0babacdc
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gnu/packages/bioconductor.scm
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@ -1199,3 +1199,32 @@ (define-public r-dnacopy
algorithm to segment DNA copy number data and identify genomic regions with
abnormal copy number.")
(license license:gpl2+)))
;; This is a CRAN package, but it uncharacteristically depends on a
;; Bioconductor package.
(define-public r-htscluster
(package
(name "r-htscluster")
(version "2.0.8")
(source
(origin
(method url-fetch)
(uri (cran-uri "HTSCluster" version))
(sha256
(base32
"0wnbfh6hdx8692jilgmv8sys1zm6fqc6mim7vvjhyqlmpm8gm0kg"))))
(properties `((upstream-name . "HTSCluster")))
(build-system r-build-system)
(propagated-inputs
`(("r-capushe" ,r-capushe)
("r-edger" ,r-edger)
("r-plotrix" ,r-plotrix)))
(home-page "https://cran.r-project.org/web/packages/HTSCluster")
(synopsis "Clustering high-throughput transcriptome sequencing (HTS) data")
(description
"This package provides a Poisson mixture model is implemented to cluster
genes from high-throughput transcriptome sequencing (RNA-seq) data. Parameter
estimation is performed using either the EM or CEM algorithm, and the slope
heuristics are used for model selection (i.e., to choose the number of
clusters).")
(license license:gpl3+)))