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gnu: Add r-bpcells.
* gnu/packages/bioinformatics.scm (r-bpcells): New variable.
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@ -687,6 +687,59 @@ (define-public r-bedtorch
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suite native in R.")
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(license license:expat))))
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(define-public r-bpcells
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(let ((commit "32ce67312185d3ed1046b4218dd3aaf1b35dcfda")
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(revision "1"))
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(package
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(name "r-bpcells")
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(version (git-version "0.1.0" revision commit))
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://github.com/bnprks/BPCells/")
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(commit commit)))
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(file-name (git-file-name name version))
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(sha256
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(base32
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"0im4sqvbii326acmd1hnimyzsllnbvnh9al3dp1nla6isgi7s6cg"))))
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(properties `((upstream-name . "BPCells")))
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(build-system r-build-system)
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(arguments
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(list
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#:phases
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'(modify-phases %standard-phases
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(add-after 'unpack 'do-not-tune
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(lambda _
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(substitute* "configure"
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(("\"-march=native\"") "\"\"")))))))
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(inputs (list hdf5 zlib))
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(propagated-inputs (list r-dplyr
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r-ggplot2
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r-ggrepel
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r-hexbin
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r-magrittr
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r-matrix
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r-patchwork
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r-rcolorbrewer
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r-rcpp
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r-rcppeigen
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r-rlang
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r-scales
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r-scattermore
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r-stringr
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r-tibble
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r-tidyr
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r-vctrs))
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(native-inputs (list pkg-config))
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(home-page "https://github.com/bnprks/BPCells/")
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(synopsis "Single cell counts matrices to PCA")
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(description
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"This is a package providing efficient operations for single cell
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ATAC-seq fragments and RNA counts matrices. It is interoperable with standard
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file formats, and introduces efficient bit-packed formats that allow large
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storage savings and increased read speeds.")
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(license license:gpl3))))
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(define-public r-btools
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(let ((commit "fa21d4ca01d37ea4d98b45582453f3bf95cbc2b5")
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(revision "1"))
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