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gnu: Add r-milor.
* gnu/packages/bioconductor.scm (r-milor): New variable.
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@ -8697,6 +8697,54 @@ (define-public r-bumphunter
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studies.")
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(license license:artistic2.0)))
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(define-public r-milor
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(package
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(name "r-milor")
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(version "1.4.0")
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(source (origin
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(method url-fetch)
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(uri (bioconductor-uri "miloR" version))
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(sha256
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(base32
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"1jz9p3grnczx0bpdw6j64x21in8zgm3qy19hmm296har2rx9m5zs"))))
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(properties `((upstream-name . "miloR")))
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(build-system r-build-system)
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(propagated-inputs
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(list r-biocgenerics
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r-biocneighbors
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r-biocparallel
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r-biocsingular
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r-cowplot
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r-dplyr
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r-edger
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r-ggbeeswarm
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r-ggplot2
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r-ggraph
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r-ggrepel
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r-gtools
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r-igraph
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r-irlba
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r-limma
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r-matrix
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r-matrixstats
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r-patchwork
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r-rcolorbrewer
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r-s4vectors
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r-singlecellexperiment
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r-stringr
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r-summarizedexperiment
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r-tibble
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r-tidyr))
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(native-inputs (list r-knitr))
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(home-page "https://marionilab.github.io/miloR")
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(synopsis "Differential neighbourhood abundance testing on a graph")
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(description
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"Milo performs single-cell differential abundance testing. Cell states
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are modelled as representative neighbourhoods on a nearest neighbour graph.
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Hypothesis testing is performed using a negative bionomial generalized linear
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model.")
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(license license:gpl3)))
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(define-public r-minfi
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(package
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(name "r-minfi")
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